Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtagaacgtgtagtgggttaatattttcagttggctaccttgttcctctctttcaacttttaaaattgctgatatggaatcatttgatcttgttttgcagTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAATCTTCCTGTTTCTGGGAAGAAGGAGGCCATAATTAGCCGAATATTAACTC

Basic information

species Glycine max
transcript GLYMA20G39280.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308967|gb|FK001743.1|FK001743
EST:     CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAG                         TTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT
genomic: CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGgtaaaccttg ... tgttttgcagTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT
EST: gi|51338223|gb|CO982089.1|CO982089
EST:     CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAG                         TTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT
genomic: CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGgtaaaccttg ... tgttttgcagTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT
EST: gi|21675708|gb|BQ628059.1|BQ628059
EST:     CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAG                         TTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT
genomic: CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGgtaaaccttg ... tgttttgcagTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT
EST: gi|58023867|gb|CX710608.1|CX710608
EST:     CAAAAGAGTGTGAAAATTATGACTGGGGTGATCTTGCTGATACTGGGAAG                         TTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATGTTACAGCACATAAT
genomic: CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGgtaaaccttg ... tgttttgcagTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT
EST: gi|214007569|gb|DB987370.1|DB987370
EST:     CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAG                         TTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT
genomic: CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGgtaaaccttg ... tgttttgcagTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT
EST: gi|51338238|gb|CO982104.1|CO982104
EST:     CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAG                         TTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT
genomic: CAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGgtaaaccttg ... tgttttgcagTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctttcaacttttaaaattgctgatatggaatcatttgatcttgttttgcagTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAATCTTCCTGTTTCTGGGAAGAAGGAGGCCATAATTAGCCGAATATTAACTC
                                          tcttgtttt  CT-rich tract
     tttcaacttttaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagaacgtgtagtgggttaatattttcagttggctaccttgttcctctctttcaacttttaaaattgctgatatggaatcatttgatcttgttttgcagTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAATCTTCCTGTTTCTGGGAAGAAGGAGGCCATAATTAGCCGAATATTAACTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - -gtagtgg
- - - - - - - - - - - - - - - -tggctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat