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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatataggctatgggaagatactcacattacttactgtcatttctacatgattattggtaactaataatgggaaacatttataccagGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGATCCTTTTGGGAGTATCAAAGGGGCAGTAAAATCAGATATGACAAGAATG

Basic information

species Glycine max
transcript GLYMA20G39280.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39280.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0062g01170.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------------------------------gtaatatataggctatgggaagata--ctcacattacttact--gtcatttctacatgattattggtaactaataatgggaaacatttataccagGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGATCCTTTTGGGAGTATCAAAGGGGCAGTAAAATCAGATATGACAAGAATG
                                                          |    |     || |   || ||    ||   ||   | ||  | ||  | || |||    || | |  ||| | ||| ||  |  |||  |||||| |||||||||| ||| || || ||||| ||||| || ||||| || || |||||||||||||||| |||||||  ||||   |||||||||||||  
gtgatgctacatttatttttctttcattccctgcttggttctttctcttttccattttttcctttcttactttaaaaaaatgacttcctcttgtatcctaagacacatatatatggccttttgca--taa-attggcaatgaaatatttcagGTCTGCAAAGACAGCTGATAAGCGAATACTCTTGTTTACGAATGAAGACGACCCTTTTGGGAGTATCACAGGGGCAACAAAAATGGATATGACAAGAACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040442|gb|BM308736.1|BM308736
EST:     AATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGG                         GTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGA
genomic: AATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGgtaatatata ... tttataccagGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGA
EST: gi|208127113|gb|GD924369.1|GD924369
EST:     AATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGG                         GTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGA
genomic: AATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGgtaatatata ... tttataccagGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgtcatttctacatgattattggtaactaataatgggaaacatttataccagGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGATCCTTTTGGGAGTATCAAAGGGGCAGTAAAATCAGATATGACAAGAATG
                          taactaataat  TA-rich tract