1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gttagtgtgttaagctctgtcttgtctatagggataaaaaaggtgccttatggccattatgtggttctttactgttgaaccttagcaagttgtaatcctgatataaatcccaattgcttctcctccttatattttgctggaaaattgatttattttttttgctacagTGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGATCTTTACCTGAAGGAACTACAGCTTTGGGTCTTCCTGTCACAATGGGTG
species | Glycine max |
transcript | GLYMA20G39020.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAG TGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGAEST: gi|19347272|gb|BM892152.1|BM892152
genomic: TAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAGgttagtgtgt ... tttgctacagTGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGA
EST: TAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAG TGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGAEST: gi|8827776|gb|BE211506.1|BE211506
genomic: TAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAGgttagtgtgt ... tttgctacagTGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGA
EST: TAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAG TGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGAEST: gi|192326776|gb|FK018903.1|FK018903
genomic: TAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAGgttagtgtgt ... tttgctacagTGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGA
EST: TAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAG TGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGAEST: gi|192298860|gb|FG987605.1|FG987605
genomic: TAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAGgttagtgtgt ... tttgctacagTGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGA
EST: TAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAG TGGGAAGCTCTTGCTCTACTGCTCATTGGGTATAAGTGTTAATCAACTAAG
genomic: TAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCATCATTCAGgttagtgtgt ... tttgctacagTGGGAAGCTCTTGCTCTACTGCTCATTGG-TATAAGTGTTAATCAACTAAG
attgcttctcctccttatattttgctggaaaattgatttattttttttgctacagTGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGATCTTTACCTGAAGGAACTACAGCTTTGGGTCTTCCTGTCACAATGGGTG
aattgat putative branch site (score: 4)
tttattttttttgct CT-rich tract
ttatattttgctggaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtgttaagctctgtcttgtctatagggataaaaaaggtgccttatggccattatgtggttctttactgttgaaccttagcaagttgtaatcctgatataaatcccaattgcttctcctccttatattttgctggaaaattgatttattttttttgctacagTGGGAAGCTCTTGCTCTACTGCTCATTGGTATAAGTGTTAATCAACTAAGATCTTTACCTGAAGGAACTACAGCTTTGGGTCTTCCTGTCACAATGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA