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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtgttgtcttaggctgttttggaatagcaagatctgtcattattttattattctgagattatgtatagagggtttttttaatgttgattccgttgcagATCGAGTTCTTCATACCCTGATAGTGTGGGAGGATATACATGAAGAACGGGATAATGGAATGCAGTGTTTGCCATTCCAAATTGGTTTCCCCCTCCGCCA

Basic information

species Glycine max
transcript GLYMA20G39020.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213598689|gb|DB958189.1|DB958189
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTT                         ATCGAGTTCTTCATACCCTGATAGTGTGGGAGGATATACATGAAGAACGGG
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTgtgagtgagt ... tccgttgcagATCGAGTTCTTCATACCCTGATAGTGTGGGAGGATATACATGAAGAACGGG
EST: gi|192326776|gb|FK018903.1|FK018903
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTT                         ATCGAGTTCTTCATACCCTGATAGTGTGGGAGGATATACATGAAGAACGGG
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTgtgagtgagt ... tccgttgcagATCGAGTTCTTCATACCCTGATAGTGTGGGAGGATATACATGAAGAACGGG
EST: gi|192298860|gb|FG987605.1|FG987605
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca
EST: gi|192298860|gb|FG987605.1|FG987605
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca
EST: gi|192298860|gb|FG987605.1|FG987605
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca
EST: gi|21993638|gb|BQ785166.1|BQ785166
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca
EST: gi|21993638|gb|BQ785166.1|BQ785166
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca
EST: gi|21993638|gb|BQ785166.1|BQ785166
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattattctgagattatgtatagagggtttttttaatgttgattccgttgcagATCGAGTTCTTCATACCCTGATAGTGTGGGAGGATATACATGAAGAACGGGATAATGGAATGCAGTGTTTGCCATTCCAAATTGGTTTCCCCCTCCGCCA
                                            ttccgtt  CT-rich tract
                             tttttttaatgttgat  TA-rich tract