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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAAGGTGGATGGGAAATTCAATTTTAGCCCAATTAGTGTTAATTTTTTGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGgttaagatcattttcccttcatctatattcaagcattttctgtcttttcaattacttataattaaagcatgcgtcaagtgaaaagtagattatggaggag...

Basic information

species Glycine max
transcript GLYMA20G39020.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934510|gb|BQ079540.1|BQ079540
EST:     TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAG                         GCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
genomic: TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGgttaagatca ... ggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
EST: gi|213598689|gb|DB958189.1|DB958189
EST:     TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAG                         GCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
genomic: TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGgttaagatca ... ggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
EST: gi|8827776|gb|BE211506.1|BE211506
EST:     TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAG                         GCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
genomic: TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGgttaagatca ... ggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
EST: gi|192326776|gb|FK018903.1|FK018903
EST:     TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAG                         GCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
genomic: TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGgttaagatca ... ggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
EST: gi|192298860|gb|FG987605.1|FG987605
EST:     TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAG                         GCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
genomic: TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGgttaagatca ... ggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
EST: gi|21993638|gb|BQ785166.1|BQ785166
EST:     TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAG                         GCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
genomic: TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGgttaagatca ... ggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT