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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTAAAGTAATTGAATTAGGAGAGAGGGGGTGCAGCCACACTGACACACCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTgtgagtgagttcaaagcaaacaaatactaaaaccatataaggttctctcgctcttgttaataattccaaattacaaacaacaacgcagtcctctctctct...

Basic information

species Glycine max
transcript GLYMA20G39020.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213598689|gb|DB958189.1|DB958189
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTT                         ATCGAGTTCTTCATACCCTGATAGTGTGGGAGGATATACATGAAGAACGGG
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTgtgagtgagt ... tccgttgcagATCGAGTTCTTCATACCCTGATAGTGTGGGAGGATATACATGAAGAACGGG
EST: gi|192326776|gb|FK018903.1|FK018903
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTT                         ATCGAGTTCTTCATACCCTGATAGTGTGGGAGGATATACATGAAGAACGGG
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTgtgagtgagt ... tccgttgcagATCGAGTTCTTCATACCCTGATAGTGTGGGAGGATATACATGAAGAACGGG
EST: gi|192298860|gb|FG987605.1|FG987605
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca
EST: gi|192298860|gb|FG987605.1|FG987605
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca
EST: gi|192298860|gb|FG987605.1|FG987605
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca
EST: gi|21993638|gb|BQ785166.1|BQ785166
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca
EST: gi|21993638|gb|BQ785166.1|BQ785166
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca
EST: gi|21993638|gb|BQ785166.1|BQ785166
EST:     CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTGT                        
genomic: CCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCG-TTTT-Tgtgagtgagt ... tccgttgca

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCTAAAGTAATTGAATTAGGAGAGAGGGGGTGCAGCCACACTGACACACCAAACTACAAATCCTCCTTTGAGACGCGTCACTCCCAAACACCGTTTTTgtgagtgagttcaaagcaaacaaatactaaaaccatataaggttctctcgctcttgttaataattccaaattacaaacaacaacgcagtcctctctctct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc