1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttacttttaagactcagaatattatgtcccccttttccattcctggtttcatacaagtatacctcttggctcttaccatgtcgtgtcttttctggtgcagCAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAG
species | Glycine max |
transcript | GLYMA20G38670.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTAGTCCTTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAG CAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAGEST: gi|192312789|gb|FK005415.1|FK005415
genomic: TTAGTCCTTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGgtaactataa ... tctggtgcagCAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAG
EST: TTAGTCCTTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAG CAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAGEST: gi|192295419|gb|FG987033.1|FG987033
genomic: TTAGTCCTTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGgtaactataa ... tctggtgcagCAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAG
EST: TTAGTCCTTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAG CAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAGEST: gi|31471671|gb|CD413699.1|CD413699
genomic: TTAGTCCTTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGgtaactataa ... tctggtgcagCAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAG
EST: TTAGTCCCTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAG CAATGTTGCTGGGTTCATTTATGTAACAGACGTTGACATTCAGAG
genomic: TTAGTCCTTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGgtaactataa ... tctggtgcagCAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAG
gtttcatacaagtatacctcttggctcttaccatgtcgtgtcttttctggtgcagCAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAG
ctcttac putative branch site (score: 3)
tgtcttttct putative PPT
aagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacttttaagactcagaatattatgtcccccttttccattcctggtttcatacaagtatacctcttggctcttaccatgtcgtgtcttttctggtgcagCAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAG
- - - - - - - - - - - - -gtccccc
- - - - - - - - - - - - - - - - - - ccattcc
- - - - - - - - - - - - - - - - - - - - - - - - tcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtctt