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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTCTTCGCCTTCGACTCCTTAACGGCACTGCTGAGATTTTTGGCACCGAGCTTCCACCCGAAATCTGGCTCAATTTTCCTCCCAGGCTCAAGTTTGCTgtaatctcttttatatccgcattgctgttacatttacatgtctattttcttctttttataagaaaaatgtttttttttcttctttcag

Basic information

species Glycine max
transcript GLYMA20G38670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38670.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 1
ACCTCTTCGCCTTCGACTCCTTAACGGCACTGCTGAGATTTTTGGCACCGAGCTTCCACCCGAAATCTGGCTCAATTTTCCTCCCAGGCTCAAGTTTGCTgtaatctcttttatatcc--gcattgctgttacatttacatgtctattttcttctttttataaga--------aaaatgtttttttttcttctttcag--
 ||||| || || || || || ||||| || ||||||||||| ||||||||| |||| |||||||||||||||   || ||||| || |||||||| ||||| |   || |  |   |   | || |||||   |||  |    |  | |       ||  | ||        ||||  |     ||| | | ||  |  
TCCTCTCCGTCTCCGGCTTCTCAACGGGACCGCTGAGATTTTCGGCACCGAGATTCCTCCCGAAATCTGGCTCTCCTTCCCTCCTAGACTCAAGTTCGCTgtgagtactgtattgctctaacttttctgttttgttttaagtagttctctgagaaaattgaaggagaagacaaaaaagataggactttgtgccttttgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8826625|gb|BE210355.1|BE210355
EST:     AGCTTCCACCCGAAATCTGGCTCAATTTTCCTCCCAGGCTCAAGTTTGCT                         GTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACT
genomic: AGCTTCCACCCGAAATCTGGCTCAATTTTCCTCCCAGGCTCAAGTTTGCTgtaatctctt ... cttctttcagGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACT