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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCATTGCTGCCACTCCAATTGAAATGCCCATTGATCCTGTGGAAGGCATTCCACTTGAAATGCCTCTTGTTTACTATTATGGGCACGCGACTCCTAGgtgattagtgatgtaacttctattttaagttggcaacattatataaattttcattggtttgaacttttgaaatcattggtagcaaatgaaggaaatgaaaatccaatcaccaaacgtatttgtttttgcag

Basic information

species Glycine max
transcript GLYMA20G38670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38670.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 4
GATGCATTGCTGCCACTCCAATTGAAATGCCCATTGATCCTGTGGAAGGCATTCCACTTGAAATGCCTCTTGTTTACTATTATGGGCACGCGACTCCTAGgtgattagtgatgt--aacttctattttaa--gttggcaacatt---------atataaattttcattggtttgaacttttg-----aaatcattggtagcaaatgaaggaaatgaaaatccaatcaccaaacgtatttgtttttgcag-------------
|||| |||||||| || |||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||| |  ||||| ||| | |||||||||| | | |   |||  |||   | || |     ||| || | ||         |||  ||||| ||||    | |   | ||       |   ||  |    | |  |  | |     ||    ||   ||   |  | || | |   |             
GATGTATTGCTGCTACCCCAATTGAAATGCCAATTGATCCAGTGGATGGAATTCCTCTTGAAATGCCTCTTGTTTATTTCTATGGCCACACAACTCCTAGgtaacttgcattgtttaacactttttatggttattgtcatctttccccttcatatactaatttccatttagctaagaatgtgcccctggacactttctgtttagtttaaaataaagtcattttgtcctaaattcttctggtatgttttgggtttggtgttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565631|gb|BE475140.1|BE475140
EST:     ATTCCACTTGAAATGCCTCTTGTTTACTATTATGGGCACGCGACTCCTAG                         TAACAATGTAGAATTGTATAAAGTGCTTGTTAAGGAGCTTGCAGGGATGAT
genomic: ATTCCACTTGAAATGCCTCTTGTTTACTATTATGGGCACGCGACTCCTAGgtgattagtg ... gtttttgcagTAACAATGTAGAATTGTATAAAGTGCTTGTTAAGGAGCTTGCAGGGATGAT