Sequence
atgc intronic sequence ATGC exonic sequencegtaatctcttttatatccgcattgctgttacatttacatgtctattttcttctttttataagaaaaatgtttttttttcttctttcagGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAG
Basic information
species | Glycine max |
transcript | GLYMA20G38670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G38670.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G39930.1 (Arabidopsis thaliana), 3'ss of exon 1
----------------------------------------------------------gtaatctc--ttttatatccgcattgctgttacatttacatgtctattttcttctttttataagaaaaatgtttttttttcttct-ttcagGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAG
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gtatgctttttacttacgcaacttcaaaattcatcttgtggacttgtgggttagtttaaagatctaagctttaggtaatgaatgatgttatgaattgagataacatagaaagttatactcttgatgatttatattgctctactattcagGTTTTTACATGGTATGGTGCAACTATTGAAATAGATGGTATCACAGGAAATGAATATATATCATGTGAG
upper sequence: GLYMA20G38670.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G04680.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaatctcttttatatccgcattgctgttac--atttacat---gtctattttcttctttttataaga-----------aaaatgtttttttttcttctt-tcagGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAG
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-----ttcttttctatttttccttctgctaatgatttatgtaaagttcataatcggagctctgaaacaccgtgcttaccatcttgtgccttttgattattgtcagGTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAG
upper sequence: GLYMA20G38670.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0066g02630.t01 (Vitis vinifera), 3'ss of exon 1
----------gtaatctcttttatatccgcattgctgttacatttacatgtctattttcttctt--tttataa-gaaaaatgtttttttttcttctttcagGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAG
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cttattataagttaaagaaaatgaaacaacccttctataatgaattgatacttaatttctctttgctttctattgacacatatttgaatttcatgaat-agGTTTTTACTTGGTATGGAGCCACAATTGAAATGGATGGTATTACAGAAACTGATTATACTGCCGATGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8826625|gb|BE210355.1|BE210355EST: AGCTTCCACCCGAAATCTGGCTCAATTTTCCTCCCAGGCTCAAGTTTGCT GTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACT
genomic: AGCTTCCACCCGAAATCTGGCTCAATTTTCCTCCCAGGCTCAAGTTTGCTgtaatctctt ... cttctttcagGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttacatgtctattttcttctttttataagaaaaatgtttttttttcttctttcagGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAG
tgtttttttttcttct CT-rich tract
tattttcttcttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatctcttttatatccgcattgctgttacatttacatgtctattttcttctttttataagaaaaatgtttttttttcttctttcagGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG