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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattggtctttgaactttagcttattgttaaattgatcactattcagacatttaactcactgctaattatgattagtattgattatagtgttctatcctctcactcctttttttttctgtgcatgtgtattctgttgcagTTGCTCTTGCATGCAATTCGTACATTCAAGGCCAATGTTGTCTTGGTTTTGGGTCAG

Basic information

species Glycine max
transcript GLYMA20G38670.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38670.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0066g02630.t01 (Vitis vinifera), 3'ss of exon 5
gtaattggtctttgaactttagcttattgttaaattgatcactattcagacattta-actcactgctaattatgattagtattgattata-gtgttctatcctctcactcctttttttttctgtgcatgtgtattctgttgcagTTGCTCTTGCATGCAATTCGTACATTCAAGGCCAATGTTGTCTTGGTTTTGGGTCAG
                                   | |  |   ||||| | ||||    ||||  | |||||| |  || |  | |  |  |||   ||    |   |  |  ||  |||||    | | |    | ||||||||| |  | ||||| ||   ||||||||| ||||||||||| ||||||| |||||||
----------------------------------gtaactaagtttcaggcttttatgagcact-ttgattatgctgtgtttctactgaatatgtgtgatttgttgtttaatgcttccttctg---gtttatgccttattgcagTTGATTCTCCATGCTATAGATACATTCAATGCCAATGTTGTTTTGGTTTCGGGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565631|gb|BE475140.1|BE475140
EST:     CAGGCATGGTGATAAATACTATGGGATGGATAGAGGGTGTAGGCTATGAT                         TTGCTCTTGCATGCAATTCGTACATTCAAGGCCAATGTTGTCTTGGTTTTG
genomic: CAGGCATGGTGATAAATACTATGGGATGGATAGAGGGTGTAGGCTATGATgtaattggtc ... tctgttgcagTTGCTCTTGCATGCAATTCGTACATTCAAGGCCAATGTTGTCTTGGTTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgttctatcctctcactcctttttttttctgtgcatgtgtattctgttgcagTTGCTCTTGCATGCAATTCGTACATTCAAGGCCAATGTTGTCTTGGTTTTGGGTCAG
            ctctcac  putative branch site (score: 3)
                                            ttctgtt  putative PPT
                      tttttttttct  TA-rich tract