Sequence
atgc intronic sequence ATGC exonic sequenceGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaacgtaaccgccctattgcgtgcattctttctgtcaaacttattggtaagacaaaaagaaaaacttgggatatcactgatgaggagattgcaactttttgatgcag
Basic information
species | Glycine max |
transcript | GLYMA20G38670.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G38670.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G04680.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaacgtaac-cgccctattgcgtgcattctttctgtcaaacttattggtaagacaaaaagaaaaacttgggatatcactgatgaggagattgcaactttttgatgcag
|| || ||||||||||| || || ||||| |||||||||| || |||||||| ||||| ||||||||||| | || | | | || ||| || | ||| | | ||| | | || | | || | |
GTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAGgttggattacttgtttcattcctacgcttgctttaaatatgtagagcaaatt--ttgtttactaactacatctctgtttccag-------------------------------
upper sequence: GLYMA20G38670.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 2
GTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaacgtaaccgccctattgcgtgcattctttctgtcaaacttattggtaagacaaaaagaaaaacttgggatatcactgatgaggagattgcaactttttgatgcag
|| |||||||||||||| || || ||||||||||||||| ||| ||||||||||||||||| ||||||||| ||| | | ||| || || || | || | | ||| | || | | ||| |||
GTTTTTACTTGGTATGGAGCCACAATTGAAATGGATGGTATTACAGAAACTGATTATACTGCCGATGAGgtatgcc----tttttttttttttgta-gctttattgcccagtaattcag-actaattatagtagcatattccttgatttcag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8826625|gb|BE210355.1|BE210355EST: CAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAG ACTCCAATGGTTAGTTATGTAAATGTCCATGCTGTGCTAGATGGAAGAAGA
genomic: CAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaac ... tttgatgcagACTCCAATGGTTAGTTATGTAAATGTCCATGCTGTGCTAGATGGAAGAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaacgtaaccgccctattgcgtgcattctttctgtcaaacttattggtaagacaaaaagaaaaacttgggatatcactgatgaggagattgcaactttttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG