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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTGgtcatattgctttttcattttacacagtgacacattatgctttggtgtcttgtattggcatgcatgtaatagtatgaagagtatataactgactcacttaatgcctttgcag

Basic information

species Glycine max
transcript GLYMA20G35990.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35990.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g02270.1 (Oryza sativa), 5'ss of exon 9
TTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTGgtcatattgctttttcattttacacagtgacacattatgctttggtgtcttgtattggcatgcatgtaatagtatgaagagtatataactgactcacttaatgcctttgcag
|||||  | || || |||||||||||||||||||| ||||| |||||||||||||||||||| |||||     || ||||| |    ||   ||    || ||| | |   ||     |    ||||   | |  ||  |  ||      |    | |   | || ||| |   |   
TTTCGATCTGCAATCCAGTTGCAATTTGATTTCCACCGGGCTATTTACAATCTTGGAACTGTCCTGgta----tgtttttttacagcactttgt----caatattcgtacatgctagctgactgcattttt-tgctaacaacaattcaccaactttcatatatttgatgtcacag---

upper sequence: GLYMA20G35990.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os10g37430.1 (Oryza sativa), 5'ss of exon 9
TTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTGgtcatattgct--ttttcatt--ttacacagtgacacattat-gctttggtgtc-ttgtattggcatgcatg---------taat--agtatgaagagtata-taactgactcacttaatgcctttgcag---------
||||| || || || ||  ||||||||||||||||||||||||| ||||||||||| || ||  ||||   ||| ||   || ||||  | ||  ||  | |   ||| | |||  |||   || | || | ||             | ||  ||| | | ||  |||  ||    ||  |||  || |||   |          
TTTCGAGCTGCAATTCAACTGCAATTTGATTTCCATCGGGCAATATACAATCTTGGGACAGTCTTGgtatgattcctgacttccattactcacctagcaataatctattgttttaatgtagctgcagtgacttgtgaaaaccttagctgattaagttttatgataataacaagaatctgtcttcttgtcttattaaatgtctcag

upper sequence: GLYMA20G35990.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G073934_T02 (Zea mays), 5'ss of exon 8
TTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTGgtcatattgctttttcattttacaca-gtgacacattatgctttggt-gtcttgtattggcatgcatgtaatagtatgaagagtatata--actgactcacttaatg-cctttgcag
|| ||||| || || ||| ||||||||||||||||||||||||| ||||| || ||||||||  ||||     |  |   |||  |  |  | |  | | | | | ||| | |     |  | |        |||  ||||||     ||||| |   || |   | || ||| | ||| |||
TTCCGTGCTGCAATTCAGCTGCAATTTGATTTCCATCGGGCAATATACAACCTCGGAACTGTCTTGgtgtgcctcataactcacatgtcgaatgatatatacttttcttagattagactaaaataattactttgttttagtatattatgtataaacttctaatagatttcatgacttttacag

upper sequence: GLYMA20G35990.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G073934_T03 (Zea mays), 5'ss of exon 9
TTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTGgtcatattgctttttcattttacaca-gtgacacattatgctttggt-gtcttgtattggcatgcatgtaatagtatgaagagtatataa--ctgactcacttaatg-cctttgcag---------------------------------------------------
|| ||||| || || ||| ||||||||||||||||||||||||| ||||| || ||||||||  ||||     |  |   |||  |  |  | |  | | | | | ||| | |     |  | |        |||  ||||||     ||||| |   || |   | || ||| | ||| |||                                                   
TTCCGTGCTGCAATTCAGCTGCAATTTGATTTCCATCGGGCAATATACAACCTCGGAACTGTCTTGgtgtgcctcataactcacatgtcgaatgatatatacttttcttagattagactaaaataattactttgttttagtatattatgtataaacttctaatagatttcatgacttttacagtttaagttccatgacaatgacactcgtgcattttcttttataatgcttcag

upper sequence: GLYMA20G35990.2 (Glycine max), 5'ss of exon 9
lower sequence: AT5G41950.1 (Arabidopsis thaliana), 5'ss of exon 9
TTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTGgtcatattgctttttcattttacacagtgacacattatgctttggtgtcttgtattggcatgcatgtaatagtatgaagagtatataactgactcacttaatgcctttgcag
||||| || || ||   ||||||||||||||||||||| || || ||||| |||||||| ||||||||||      |||     ||| |||| | || | |||      ||    ||||| |  ||  |  || | | ||   |  ||  ||   |  | || |||  |         
TTTCGGGCGGCAATCAGGTTGCAATTTGATTTCCATCGAGCCATATACAACCTTGGAACCGTTCTGgtcag-----tttcaatcttttcaca-taactctttacatgcagga---ttgtaattccaatccagtta-attaaccactgtggatttttctcacatttacag---------

upper sequence: GLYMA20G35990.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0025g02520.t01 (Vitis vinifera), 5'ss of exon 9
TTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTGgtcatattgctttttcattttacacagtgacacattatgctt-tggtgtcttgtattggcatgcatgtaatagtatgaagagtatataactgactcactta-atgcctttgcag------------------------------------------------------------------
|| || ||||| |||||||||||||||||||||||| | ||||||||||| ||||| |||||||||||    |||||  |  || ||   |       ||||||  || |||  |  | |||     || ||  |  | | |    ||||| ||  ||  |   | |  ||   |  ||                                                                   
TTCCGAGCAGCAATACAGTTGCAATTTGATTTCCATAGAGCAATTTACAACCTTGGTACTGTTCTGgtgggtttgctagta-atcttgtcct----tgcattatttttatggcatgatatatccttttgaatacagaattctttgcagtatctacttggttgggtcacgtgaaataccatatgatcttaccttatcatcacatgtcaattgaatgaaataaattgatttcatcttattatttacag