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...aaatctttgaaatgtgatttcatctcaatctataaacagaagaatctctttagattttgaaaatgcacctctaatcttcatttttacttggattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTAGTTTACACAATTTATGTGCGAGGCAAAAGTGATGTACTGGCTGGTATAA
species | Glycine max |
transcript | GLYMA20G35990.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTAEST: gi|12773703|gb|BG238630.1|BG238630
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTAEST: gi|13479456|gb|BG508799.1|BG508799
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTAEST: gi|207683952|gb|GD667439.1|GD667439
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
ctctttagattttgaaaatgcacctctaatcttcatttttacttggattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTAGTTTACACAATTTATGTGCGAGGCAAAAGTGATGTACTGGCTGGTATAA
ctctaat putative branch site (score: 3)
taatcttcattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatctttgaaatgtgatttcatctcaatctataaacagaagaatctctttagattttgaaaatgcacctctaatcttcatttttacttggattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTAGTTTACACAATTTATGTGCGAGGCAAAAGTGATGTACTGGCTGGTATAA
- - - - - - - - - - - - - - - - -aaacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacct