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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAGgttcttctcaattaatttgtaaaagtttgtcttgcattttcttataatgtgggaacatgattttgaaacagcctttcttgtttccttagataaatatttg...

Basic information

species Glycine max
transcript GLYMA20G35990.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35990.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g02520.t01 (Vitis vinifera), 5'ss of exon 6
GCAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAGgttcttctcaattaatttgtaaaagtttgtcttgcattttcttataatgtgggaacatgattttgaaacagcctttcttgt---ttccttagataaatatttg-
|||||  | |||||||||||||| |||||||| || ||||||||||| |||||     | |   |  |||| |   |||    || | |||    |    |   | |||  ||||        ||| ||| |   |  |||   |   |  ||| 
GCAACTAGAAACTATGAAAAAGCTGTTCAACTCAATTGGAACAGTCCCCAGgtatggtttaga-atcttgtca---tttcctctgaactttgaattttacttacagcattcttttcctttcttcttccttttcaatctctttcctttttccttga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814226|gb|BI786501.1|BI786501
EST:     CAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAG                         GCGCTCAATAACTGGGGACTTGCTCTTCAG
genomic: CAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAGgttcttctca ... tctattacagGCGCTCAATAACTGGGGACTTGCTCTTCAG