Sequence
atgc intronic sequence ATGC exonic sequencegtaacaaaaatatttgagggaatcagatggaattgacaaacaagtgttttacatcagctatgttctctgagtattaactcatttccacttccacatttgacatttccatattctttgattttgatgcagTTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTG
Basic information
species | Glycine max |
transcript | GLYMA20G35990.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35990.2 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os03g02270.1 (Oryza sativa), 3'ss of exon 8
gtaacaaaaatatttgagggaatcagatggaattgacaaacaagtgttttacatcagctatgttctctgagtattaactcatttccacttccacatttgacatttccatattctttgattttgatgcagTTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTG
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------------------gtagttatatggtacctcctaattaa-gtgtcagggaaattac-ttctgagcaaatgtatctacaagaaaattctgaaactcaaaacctgtatttttt--ttctgttgcagTTTCGATCTGCAATCCAGTTGCAATTTGATTTCCACCGGGCTATTTACAATCTTGGAACTGTCCTG
upper sequence: GLYMA20G35990.2 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os10g37430.1 (Oryza sativa), 3'ss of exon 8
gtaacaaaaatatttgagggaatcagatggaattgacaaacaagtgttttacatcagctatgttctctgagtattaactcatttccacttccacatttgacatttccatattctttgattttgatgcagTTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTG
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----------------------gtagatgcaattt-----ctattactgtgcgagaatcatttttgatgattgt-atcttctataaactattgggctgttgacgccccccttctgatgtcttg--gcagTTTCGAGCTGCAATTCAACTGCAATTTGATTTCCATCGGGCAATATACAATCTTGGGACAGTCTTG
upper sequence: GLYMA20G35990.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G073934_T01 (Zea mays), 3'ss of exon 8
gtaacaaaaatatttgagggaatcagatggaattgacaaacaagtgttttacatcagctatgttctctgagtattaactcatttccacttccacatttgacatttccatattctttgattttgatgcagTTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTG
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--------------------------gtagatacacttttttattgttgtgcctatgaattatttttatggtattg-cttagtaaaaattatctctttgatgaaccactgacactaacttctactgcagTTCCGTGCTGCAATTCAGCTGCAATTTGATTTCCATCGGGCAATATACAACCTCGGAACTGTCTTG
upper sequence: GLYMA20G35990.2 (Glycine max), 3'ss of exon 8
lower sequence: AT5G41950.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaacaaaaatatttgagggaatcagatggaattgacaaacaagtgttt-tacatcagctatgttc-tctgagtatt--aactcatttccact-tccacatttgacatttccatattctttgattt-tgatgcagTTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTG
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-------------------------------------------gtgcttattcgtctgtcgaactaatgtaaacattgcatttgatatgcacgattgattttttactgtcccttgtcgcttgttttaccatacagTTTCGGGCGGCAATCAGGTTGCAATTTGATTTCCATCGAGCCATATACAACCTTGGAACCGTTCTG
upper sequence: GLYMA20G35990.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv02s0025g02520.t01 (Vitis vinifera), 3'ss of exon 8
gtaacaaaaatatttgagggaatcagatggaattgacaaacaagtgttttacatcagctatgttctctgagtattaactcatttccacttccacatttgacatttccatattctttgattttgatgcagTTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTG
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gta-caaatttaactcagaga--catacagtgct--tggatgaatatacaggaacaagcat-taaaataattataattttagttgaatgttctattcttttgatacctttcaccttg-tcatattgcagTTCCGAGCAGCAATACAGTTGCAATTTGATTTCCATAGAGCAATTTACAACCTTGGTACTGTTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15814226|gb|BI786501.1|BI786501EST: TTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACTGCTATCAGCAAG TTTCGTGCAGCCATACAGTTGCAATTTGATT
genomic: TTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACTGCTATCAGCAAGgtaacaaaaa ... tttgatgcagTTTCGTGCAGCCATACAGTTGCAATTTGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taactcatttccacttccacatttgacatttccatattctttgattttgatgcagTTTCGTGCAGCCATACAGTTGCAATTTGATTTCCATCGGGCAATTTACAATCTTGGAACTGTTCTG
atattctttgatttt TA-rich tract