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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaaaaataaatgctgccttttattaatggtttcatgcatattttggatagtgctttataaagaattgaattcatactgaacttgaatggaagaaattttcacatttttggttatagttgtcaagtgttggttgatagagatcatcacacactctattttttgttgaatttaaccttttttttcccccagGCAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAG

Basic information

species Glycine max
transcript GLYMA20G35990.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35990.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g02520.t01 (Vitis vinifera), 3'ss of exon 5
gtcagtaaaaataaatgctgccttttattaatggtttcatgcatattttggatagtgctttataaagaattgaattcatactgaacttgaatggaagaaattttcaca----tttttggttatagttgtcaagtgttggttgatagagatcatcacacactctattttttg--ttgaatttaaccttttttttcccccagGCAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAG
                                                                                                    |||   ||     |||   ||||| ||| | | |  |  ||    ||||  |    |   |  |     |   |   || | |   ||||   ||  ||||||||  | |||||||||||||| |||||||| || ||||||||||| |||
----------------------------------------------------------------------------------------------------tttctgcaagctctttaaattataattgcccaataatcttttgctgagaaaagacaattttggaaacactaattcacatcttattcttttcaccctgcagGCAACTAGAAACTATGAAAAAGCTGTTCAACTCAATTGGAACAGTCCCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814226|gb|BI786501.1|BI786501
EST:     GGGCAAAGATGCGTGGCCGCACAAAGGAAGCTGAAGAGCTATGGAAGCTG                         GCAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAG
genomic: GGGCAAAGATGCGTGGCCGCACAAAGGAAGCTGAAGAGCTATGGAAGCTGgtcagtaaaa ... tttcccccagGCAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagagatcatcacacactctattttttgttgaatttaaccttttttttcccccagGCAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAG
                                atttaac  putative branch site (score: 3)
                                 tttaaccttttttttc  CT-rich tract
                   tattttttgttgaatt  TA-rich tract