Sequence
atgc intronic sequence ATGC exonic sequenceTGTTAGCCCAGATTCCACTTCACCCTCTAAAGATGCTTTGCTTGAGGAGGCTTGTAAGAAGTATGATGAGGCCACTCGTCTTTGTCCCACACTGCATGATgtacgtaaggatatacttctttatgatgttttagatgaatgggtagcaaatttttagctaggatctggatagggtgtaaatgagttcaacattggaatac...
Basic information
species | Glycine max |
transcript | GLYMA20G35990.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35990.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g37430.1 (Oryza sativa), 5'ss of exon 4
---TGTTAGCCCAGATTCCACTTCACCCTCTAAAGATGCTTTGCTTGAGGAGGCTTGTAAGAAGTATGATGAGGCCACTCGTCTTTGTCCCACACTGCATGATgtacgtaaggat-----atacttctttatgatgttttagatgaatgggtagca-aatttttagctaggatctggatagggtgtaaatgagttcaacattggaatac
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CAATGTAGATCCAAATTCTAGTTCGTCC---AAAGATGCATTGCTTGAGGAGGCTTGCAAAAAGTATGCTGAAGCTACCCGTCTTTGCCCAACTCTTTATGATgtaagtttttgttcctcacatttgtttgatttgaagaatttgaattgataagagaattttctgagttggtcttgtccaagaaaagatgagaagagacatg------
upper sequence: GLYMA20G35990.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G073934_T01 (Zea mays), 5'ss of exon 4
---TGTTAGCCCAGATTCCACTTCACCCTCTAAAGATGCTTTGCTTGAGGAGGCTTGTAAGAAGTATGATGAGGCCACTCGTCTTTGTCCCACACTGCATGATgtacgt---aaggatatacttctttatgatgttttagatgaatgggtagcaaatttttagctaggatctggatagggtgtaaatgagttcaacattggaatac
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CAATGTGGATCCCAATTCGAGTTC---CTCTAAAGATGCATTGCTGGAGGAGGCTTGCAAAAAGTATGCTGAAGCTACTCGACTTAGTCCAACTCTTTATGATgtaagttcctaacttatgtttgatcagaacagttcaaatttacagaagtttttttcagtgcttttggccctttcaagaa-aaagaaatttaacac-gtcaca-
upper sequence: GLYMA20G35990.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G41950.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTTAGCCCAGATTCCACTTCACCCTCTAAAGATGCTTTGCTTGAGGAGGCTTGTAAGAAGTATGATGAGGCCACTCGTCTTTGTCCCACACTGCATGATgtacgta-----aggat---atacttctttatgatgttttagatgaatg-ggtagcaaatttttagctag-gatctggatagggtgtaaatgagttcaacattggaatac------------
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TGTCAGCCCGGATTCTGTTTCACCTTCTAAAGATGATTTGCTGGAGGAAGCTTGTAAGAAGTACGATGAGGCAACCCGTCTCTGCCCGACGCTGTATGATgtatgtattaataggattctatatctgttagttttgtttctggtttatgtaactgcaaatgcaatgtaatcgctttcagttcataataaatggcttcaacttttatgtatgacgtatgatag
upper sequence: GLYMA20G35990.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g02520.t01 (Vitis vinifera), 5'ss of exon 4
TGTTAGCCCAGATTCCACTTCACCCTCTAAAGATGCTTTGCTTGAGGAGGCTTGTAAGAAGTATGATGAGGCCACTCGTCTTTGTCCCACACTGCATGATgtacgtaaggatatacttctttatgatgttttagatgaatgggtagcaaatttt---tagctag-gatctggatagggtgtaaatgagttcaacattggaatac
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TGTGGGTCCTGATTCTAGTTCACCTTCTAAAGATGCATTGCTTGAGGAGGCTTGTAAAAAATATGATGAGGCCACCCGTCTTTGCCCCACACTTCATGATgtatgtgtgcatttccattctta-gattattttgttgaatgtttgggcaattgaggatatctaaaggaatggctataccaagcatga--tcatcat-ggaacatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15814226|gb|BI786501.1|BI786501EST: CTTGTAAGAAGTATGATGAGGCCACTCGTCTTTGTCCCACACTGCATGAT GCTTTCTACAATTGGGCTATAGCAATTTCTGATCGGGCAAAGATGCGTGGC
genomic: CTTGTAAGAAGTATGATGAGGCCACTCGTCTTTGTCCCACACTGCATGATgtacgtaagg ... ttgtattcagGCTTTCTACAATTGGGCTATAGCAATTTCTGATCGGGCAAAGATGCGTGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTAGCCCAGATTCCACTTCACCCTCTAAAGATGCTTTGCTTGAGGAGGCTTGTAAGAAGTATGATGAGGCCACTCGTCTTTGTCCCACACTGCATGATgtacgtaaggatatacttctttatgatgttttagatgaatgggtagcaaatttttagctaggatctggatagggtgtaaatgagttcaacattggaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT