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...tatatttatagattgtaaattcagtattttggtagcaaattcagaatttgatttgctgcatttaatagaaactcaacattttcaaaaaaaaatcttgtagGTTCAAATGCATTGATTTGGATGGAAATGGAGTGCTGACACCTAATGAAATGCAGTTCTTTTATGAGGAGCAGTTGCATCGGATGGAGTGCATGGCCCAA
species | Glycine max |
transcript | GLYMA20G35090.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTATACTTGCCGAGGAAGATAAGTCATCCGAACCTAGTCTCGAATACTG GTTCAAATGCATTGATTTGGATGGAAATGGAGTGCTGACACCTAATGAAATEST: gi|51343535|gb|CO984268.1|CO984268
genomic: TTTATACTTGCCGAGGAAGATAAGTCATCCGAACCTAGTCTCGAATACTGgtatacttcc ... aatcttgtagGTTCAAATGCATTGATTTGGATGGAAATGGAGTGCTGACACCTAATGAAAT
EST: TTTATACTTGCCGAGGAAGATAAGTCATCCNAACCTAGTCTCGAATACTG GTTCAAATGCATTGATTTGGATGGAAATGGAGTGCTGACACCTAATGAAATEST: gi|8403723|gb|BE059419.1|BE059419
genomic: TTTATACTTGCCGAGGAAGATAAGTCATCCGAACCTAGTCTCGAATACTGgtatacttcc ... aatcttgtagGTTCAAATGCATTGATTTGGATGGAAATGGAGTGCTGACACCTAATGAAAT
EST: TTTATACTTGCCGAGGAAGATAAGTCATCCGAACCTAGTCTCGAATACTG GTTCANATGCATTGATTTGGATGGAAATGGAGTGCTGACACCTAATGAAAT
genomic: TTTATACTTGCCGAGGAAGATAAGTCATCCGAACCTAGTCTCGAATACTGgtatacttcc ... aatcttgtagGTTCAAATGCATTGATTTGGATGGAAATGGAGTGCTGACACCTAATGAAAT
atttgatttgctgcatttaatagaaactcaacattttcaaaaaaaaatcttgtagGTTCAAATGCATTGATTTGGATGGAAATGGAGTGCTGACACCTAATGAAATGCAGTTCTTTTATGAGGAGCAGTTGCATCGGATGGAGTGCATGGCCCAA
atttaat putative branch site (score: 4)
atttaatagaaactca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatttatagattgtaaattcagtattttggtagcaaattcagaatttgatttgctgcatttaatagaaactcaacattttcaaaaaaaaatcttgtagGTTCAAATGCATTGATTTGGATGGAAATGGAGTGCTGACACCTAATGAAATGCAGTTCTTTTATGAGGAGCAGTTGCATCGGATGGAGTGCATGGCCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA