Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatcacccttattttttaaaattcttcttggtgtatttttttgtatgttcctttcatccgtatctggttaattttttcattgatgcattatgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTTGAGAACTCAACAAATACAAATGCTCTGTCAATCAACTCTCTACCTTCCT

Basic information

species Glycine max
transcript GLYMA20G35090.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502095|gb|AW203468.1|AW203468
EST:     TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTG                         GTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTT
genomic: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTGgtacacacta ... atgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTT
EST: gi|26048229|gb|CA784770.1|CA784770
EST:     TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTG                         GTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTT
genomic: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTGgtacacacta ... atgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTT
EST: gi|208244422|gb|GE038463.1|GE038463
EST:     TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTG                         GTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTT
genomic: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTGgtacacacta ... atgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttcctttcatccgtatctggttaattttttcattgatgcattatgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTTGAGAACTCAACAAATACAAATGCTCTGTCAATCAACTCTCTACCTTCCT
                                 cattgat  putative branch site (score: 4)
                       ttaattttttcattga  TA-rich tract