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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatattttataacatattcttgtatttatcccttttctacatttgttataaaaaagttatcagcttatttctcactgctaagtgttttgttcttaaacagCTGAGACTGTCATACACAGAATATTTTACTACATGAATAGATCAGGAAATGGCCGACTTACACTGAGGGAATTGAAACGTGGGAACCTAATTGATGCAAT

Basic information

species Glycine max
transcript GLYMA20G35090.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35090.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 3'ss of exon 6
tatattttataacatattcttgtatttatcccttttctac-atttgttataaaaaagttatcagcttatttctca-ctgctaagtgttttgttcttaa---acagCTGAGACTGTCATACACAGAATATTTTACTACATGAATAGATCAGGAAATGGCCGACTTACACTGAGGGAATTGAAACGTGGGAACCTAATTGATGCAAT
     |    |   ||   ||| |  |   |  |  |||    | || ||      | |  | || | |   ||| |||||||  ||||  |   |||    ||||||||||||| ||| ||||||| ||||| | ||| |||||| | ||||||||||  ||||| || || ||  | |||||||||||  |||||| ||| ||
-----tgaggattctacgattggacctggtcaatgactattggtagtgatttgctggatgcctgcatctcattcatctgctaatcgtttattatgtaattttcagCTGAGACTGTAATATACAGAATCTTTTATTCCATAAATAGAGCTGGAAATGGCCATCTTACCCTCAGAGAGCTAAAACGTGGGAATTTAATTGCTGCGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401184|gb|BM177966.1|BM177966
EST:     TCCTGGATTGGAGTTTTTGCAAACCACGCCTGAATTTCAGGAAAGATATG                         CTGAGACTGTCATACACAGAATATTTTACTACATGAATAGATCAGGAAATG
genomic: TCCTGGATTGGAGTTTTTGCAAACCACGCCTGAATTTCAGGAAAGATATGgtatggtcat ... tcttaaacagCTGAGACTGTCATACACAGAATATTTTACTACATGAATAGATCAGGAAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataaaaaagttatcagcttatttctcactgctaagtgttttgttcttaaacagCTGAGACTGTCATACACAGAATATTTTACTACATGAATAGATCAGGAAATGGCCGACTTACACTGAGGGAATTGAAACGTGGGAACCTAATTGATGCAAT
                       ttctcac  putative branch site (score: 2)
                                       ttttgttctt  putative PPT
     aaaaagttat  TA-rich tract