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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGACACAGATCATGACTTTTTCATTGATAGAGAGAACCTTATTAAATATGGGAACCATTCTCTTACCTATCGGATTGTTGATAGAATTTTTTCCCAGgtctgttggtattttacatctttgacaatgtgccttgttcagccctgctctactgtgtatggctatagcaagcctcatactgaaaattgttagtgttagt...

Basic information

species Glycine max
transcript GLYMA20G35090.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35090.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 5'ss of exon 8
GCTCGACACAGATCATGACTTTTTCATTGATAGAGAGAACCTTATTAAATATGGGAACCATTCTCTTACCTATCGGATTGTTGATAGAATTTTTTCCCAGgtctgttggtattttacatctttgacaatgtgccttgttcagccctgctctactgtgtatggctatagcaagcctcatactgaaaattgttagtgttagt
| | |||||||||||||| ||||| ||||||| |||||||||||| | |||||| || |||||  | ||||| || || ||||||||||| || || |||||    | |||| ||  ||  |  | |  |  |   | |     ||||  || |  |  |   | | |    |   ||  |    |              
GTTGGACACAGATCATGATTTTTTGATTGATAAAGAGAACCTTATCAGATATGGAAATCATTCATTAACCTACCGAATCGTTGATAGAATCTTCTCACAGgt----tagtatgttctattctgcatacagaactgagatg----ctgccttagttggcctaaatgttgtttcctatatgttacttag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403556|gb|BE059190.1|BE059190
EST:     ATGGGAACCATTCTCTTACCTATCGGATTGTTGATAGAATTTTTTCCCAG                         GTTCCAAGGAAATTTACCAGTAAAATTGAAGGGAAGATGAACTATGAAGAT
genomic: ATGGGAACCATTCTCTTACCTATCGGATTGTTGATAGAATTTTTTCCCAGgtctgttggt ... actgtgccagGTTCCAAGGAAATTTACCAGTAAAATTGAAGGGAAGATGAACTATGAAGAT
EST: gi|8403723|gb|BE059419.1|BE059419
EST:     ATGGGAACCATTCTCTTACCTATCGGATTGTTGATAGAATTTTTTCCCAG                         GTTCCAAGGAAATTTACCAGTAAAATTGAAGGGAAGATGAACTATGAAGAT
genomic: ATGGGAACCATTCTCTTACCTATCGGATTGTTGATAGAATTTTTTCCCAGgtctgttggt ... actgtgccagGTTCCAAGGAAATTTACCAGTAAAATTGAAGGGAAGATGAACTATGAAGAT