1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttagatatcaaaatttaccatgtagctgtttgagtacatttggtattggcattactgcctattgaactaatgtctctatttcttaacatatatattgtagGGATCAATTTATAGACTATTGGATTCGGGGCAATATGTTAGCTATGGATTTACCCACACAAATATATACCATACTGAAGCAACCATATCGAACATACCTT
species | Glycine max |
transcript | GLYMA20G35090.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGCTCTTTTCAAAAAGATTGATGTCAATTTTACTGGATCCATAACAAG GGATCAATTTATAGACTATTGGATTCGGGGCAATATGTTAGCTATGGATTTEST: gi|17963079|gb|BM269832.1|BM269832
genomic: ACTGCTCTTTTCAAAAAGATTGATGTCAATTTTACTGGATCCATAACAAGgtaccaaatt ... tatattgtagGGATCAATTTATAGACTATTGGATTCGGGGCAATATGTTAGCTATGGATTT
EST: ACTGCTCTTTTCAAAAAGATTGATGTCAATTTTACTGGATCCATAACAAG GGATCAATTTATAGACTATTGGATTCGGGGCAATATGTTAGCTATGGATTTEST: gi|17401184|gb|BM177966.1|BM177966
genomic: ACTGCTCTTTTCAAAAAGATTGATGTCAATTTTACTGGATCCATAACAAGgtaccaaatt ... tatattgtagGGATCAATTTATAGACTATTGGATTCGGGGCAATATGTTAGCTATGGATTT
EST: ACTGCTCTTTTCAAAAAGATTGATGTCAATTTTACTGGATCCATAACAAG GGATCAATTTATAGACTATTGGATTCGGGGCAATATGTTAGCTATGGATTT
genomic: ACTGCTCTTTTCAAAAAGATTGATGTCAATTTTACTGGATCCATAACAAGgtaccaaatt ... tatattgtagGGATCAATTTATAGACTATTGGATTCGGGGCAATATGTTAGCTATGGATTT
ttggcattactgcctattgaactaatgtctctatttcttaacatatatattgtagGGATCAATTTATAGACTATTGGATTCGGGGCAATATGTTAGCTATGGATTTACCCACACAAATATATACCATACTGAAGCAACCATATCGAACATACCTT
tcttaac putative branch site (score: 2)
tatttcttaacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagatatcaaaatttaccatgtagctgtttgagtacatttggtattggcattactgcctattgaactaatgtctctatttcttaacatatatattgtagGGATCAATTTATAGACTATTGGATTCGGGGCAATATGTTAGCTATGGATTTACCCACACAAATATATACCATACTGAAGCAACCATATCGAACATACCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA