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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttctttgttcttgttcttgcgtcttgattcttttacttgtttttgtttcattcctctgcagtatagcaagtggtaactgtcctacgtttgcagAATGAGGGATATATCACATTACGAGATGTTAAAGGCAGTAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTACTTTCGAGA

Basic information

species Glycine max
transcript GLYMA20G35090.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35090.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G148323_T01 (Zea mays), 3'ss of exon 10
gtttttctttgttcttgttcttgcgtcttgattcttttacttgtttttgtttcattcctctgcagtatagcaagtggtaactgtcctacgtttgcagAATGAGGGATATATCACATTACGAGATGTTAAAGGCAGTAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTACTTTCGAGA
                           | ||||||  ||| | ||       | ||        |  |   || |    | | ||||   | | ||||||||| | ||| | ||  |||| ||  | ||| |  ||||||| || |||||  | ||||||||||||||||||||||||||||| ||  | || || |
--------------------------gtagattctcatacatattacataaacgttttatctgggcttgataaat----attttcctt--tctacagAATGAGAGCTATTTAACTCTACGGGACTTAAAACGGTGTAAACTCTCAGGAAACATATTCAATATTCTTTTCAATCTCAACAAGTTCATGGCATTTGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403556|gb|BE059190.1|BE059190
EST:     TGCTGTATGAAGATATATTGTGTCAGATTGTGGATATGATTGGACCAGAT                         AATGAGGGATATATCACATTACGAGATGT-AAAGGCA
genomic: TGCTGTTTGAAGATATATTGTGTCAGATTGTGGATATGATTGGACCAGAGgtttttcttt ... acgtttgcagAATGAGGGATATATCACATTACGAGATGTTAAAGGCA
EST: gi|51343535|gb|CO984268.1|CO984268
EST:     TGCTGTTTGAAGATATATTGTGTCAGATTGTGGATATGATTGGACCAGAG                         AATGAGGGATATATCACATTACGAGATGTTAAAGGCAGTAAACTTTCTGGA
genomic: TGCTGTTTGAAGATATATTGTGTCAGATTGTGGATATGATTGGACCAGAGgtttttcttt ... acgtttgcagAATGAGGGATATATCACATTACGAGATGTTAAAGGCAGTAAACTTTCTGGA
EST: gi|8403723|gb|BE059419.1|BE059419
EST:     TGCTGTTTGAAGATATATTGTGTCAGATTGTGGATATGATTGGACCAGAG                         AATGAGGGATATATCACATTACGAGATGTTAAAGGCAGTAAACTTTCTGGA
genomic: TGCTGTTTGAAGATATATTGTGTCAGATTGTGGATATGATTGGACCAGAGgtttttcttt ... acgtttgcagAATGAGGGATATATCACATTACGAGATGTTAAAGGCAGTAAACTTTCTGGA
EST: gi|21887061|gb|BQ740274.1|BQ740274
EST:     GATTGGACCAGAG                         AATGAGGGATATATCACATTACGAGATGTTAAAGGCAGTAAACTTTCTGGA
genomic: GATTGGACCAGAGgtttttcttt ... acgtttgcagAATGAGGGATATATCACATTACGAGATGTTAAAGGCAGTAAACTTTCTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgtttcattcctctgcagtatagcaagtggtaactgtcctacgtttgcagAATGAGGGATATATCACATTACGAGATGTTAAAGGCAGTAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTACTTTCGAGA
                                tggtaac  putative branch site (score: 2)
       tttcatt  TA-rich tract