Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAAAATGGCCGTCCACCTCCAAGTGAAATGAAAGAGCATTTCATTTATCAAATTGATAGTAGATTTTATGGTCATTTGGATGGTCTACAATTACATGgtgagcaattcccactgagaacattgtatttatgacttaattagttctatattctcatttatgatagttttatatgcagaaagtccagttcttttttcaaattttgttgttaatctgtattctgatttgcag

Basic information

species Glycine max
transcript GLYMA20G35090.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048229|gb|CA784770.1|CA784770
EST:     TCAAATTGATAGTAGATTTTATGGTCATTTGGATGGTCTACAATTACATG                         AATTTAAGTCTGTTACAAAAGAGCTCTGCAAACTTCCCTCATTTTTCTCCA
genomic: TCAAATTGATAGTAGATTTTATGGTCATTTGGATGGTCTACAATTACATGgtgagcaatt ... tgatttgcagAATTTAAGTCTGTTACAAAAGAGCTCTGCAAACTTCCCTCATTTTTCTCCA
EST: gi|17963079|gb|BM269832.1|BM269832
EST:     TCAAATTGATAGTAGATTTTATGGTCATTTGGATGGTCTACAATTACATG                         AATTTAAGTCTGTTACAAAAGAGCTCTGCAAACTTCCCTCATTTTTCTCCA
genomic: TCAAATTGATAGTAGATTTTATGGTCATTTGGATGGTCTACAATTACATGgtgagcaatt ... tgatttgcagAATTTAAGTCTGTTACAAAAGAGCTCTGCAAACTTCCCTCATTTTTCTCCA
EST: gi|17401184|gb|BM177966.1|BM177966
EST:     GGTCATTTGGATGGTCTACAATTACATG                         AATTTAAGTCTGTTACAAAAGAGCTCTGCAAACTTCCCTCATTTTTCTCCA
genomic: GGTCATTTGGATGGTCTACAATTACATGgtgagcaatt ... tgatttgcagAATTTAAGTCTGTTACAAAAGAGCTCTGCAAACTTCCCTCATTTTTCTCCA