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TCTGGTAAAAAACACTGCCACACTCTCTGGATCATTGTTTACTGTACATGTCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaacaagaaacttgagcaaaagtagtgagaatgacataatgtgatcaagttgccaatatactttgtgtttgagaatggatgcttcaatttttatc...
species | Glycine max |
transcript | GLYMA20G33060.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTCCATTATATEST: gi|6070532|gb|AW099919.1|AW099919
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG GTAATAAGCACATGGGGTGTTCATCACAATATTGACTTTCTTGCATTATATEST: gi|7924149|gb|AW830175.1|AW830175
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: CATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATATEST: gi|22523872|gb|BU082683.1|BU082683
genomic: CATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: CAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATATEST: gi|192318791|gb|FK008003.1|FK008003
genomic: CAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTCCATTATATEST: gi|23064484|gb|BU579257.1|BU579257
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATATEST: gi|38193120|gb|CF922326.1|CF922326
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG GTAATAAGCACATGGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAEST: gi|15663580|gb|BI700951.1|BI700951
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACAT-GGGGTGTTCAAAACAATATTGACTTCCTTTCATTATA
EST: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATATEST: gi|5820250|gb|AI988456.1|AI988456
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
EST: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAG GTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
genomic: TCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaaca ... actaactcagGTAATAAGCACATGGGGTGTTCAAAACAATATTGACTTCCTTTCATTATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGTAAAAAACACTGCCACACTCTCTGGATCATTGTTTACTGTACATGTCTCTCAGATTCACATCGATCTTCCTACTCTTGCTGATAAAGATAAGGAGgtaactaacaagaaacttgagcaaaagtagtgagaatgacataatgtgatcaagttgccaatatactttgtgtttgagaatggatgcttcaatttttatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagaaa