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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatgcactcaagtttgtctttagttgatttgcattgtgaaacatgacactgaaactaatcactttttgctaactgattccttttatgacgctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCACGACACCCA

Basic information

species Glycine max
transcript GLYMA20G33060.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019459|gb|CX706201.1|CX706201
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|23734603|gb|BU765538.1|BU765538
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|254320985|gb|GR827434.1|GR827434
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|33389653|gb|CA852860.1|CA852860
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|58024592|gb|CX711333.1|CX711333
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|7028356|gb|AW458139.1|AW458139
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|15816107|gb|BI788382.1|BI788382
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|192296891|gb|FG991917.1|FG991917
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|57574872|gb|CX547847.1|CX547847
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|209729394|gb|BW663669.1|BW663669
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|18041371|gb|BM309665.1|BM309665
EST:     CAATTTGA-GACAAATCAACTCCGATTGACGTTCACCCGG-GCTTTTGAG                         GCTAGGCA-TCTCTTATTGTGAGAGGGCTTTTTC
genomic: CAATT-GAAGACAAATCAACTCCGATGGACGTTCACC-GGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTC
EST: gi|21678390|gb|BQ630741.1|BQ630741
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|38193712|gb|CF922918.1|CF922918
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|58021524|gb|CX708265.1|CX708265
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|37995900|gb|CF807489.1|CF807489
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|192324820|gb|FK018796.1|FK018796
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|16344795|gb|BI970390.1|BI970390
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|57575922|gb|CX548893.1|CX548893
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|17022140|gb|BM093174.1|BM093174
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|120530840|gb|EH258973.1|EH258973
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|12690010|gb|BG156346.1|BG156346
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|37994787|gb|CF806376.1|CF806376
EST:     CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCA
EST: gi|208262230|gb|GE060529.1|GE060529
EST:     CTCAATTGAAGACAAATCAACTCCGGTGGACGTTCACCGGTGCTTTTGAG                         GCTAGGCAATCTCTTATTGTGAGAGGTCTTTTT
genomic: CTCAATTGAAGACAAATCAACTCCGATGGACGTTCACCGGTGCTTTTGAGgtatacaatt ... gctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacactgaaactaatcactttttgctaactgattccttttatgacgctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCACGACACCCA
       aaactaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acatgcactcaagtttgtctttagttgatttgcattgtgaaacatgacactgaaactaatcactttttgctaactgattccttttatgacgctatggcagGCTAGGCAATCTCTTATTGTGAGAGGTCTTTTTCCTATGCTGGCAGATCCACGACACCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
-catgcac
- - - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - -acatgac
- - - - - - - - - - - - - - - - - - - - - - - - - -gaaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaac