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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTGAAGAAGGGTGATACTATTTTTATTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaatcttgattgactgatacaatcttaatgcatgtaaaaatattttattctgattatgtgattattttaataaattctgttgtgtatgttattg...

Basic information

species Glycine max
transcript GLYMA20G33060.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318792|gb|FK008004.1|FK008004
EST:     TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG                         GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: gi|6070532|gb|AW099919.1|AW099919
EST:     TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG                         GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: gi|13180911|gb|BG352251.1|BG352251
EST:     TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG                         GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: gi|213590485|gb|DB968077.1|DB968077
EST:     TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG                         GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAA-CACTGCC
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: gi|192318791|gb|FK008003.1|FK008003
EST:     TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG                         GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: gi|209729393|gb|BW663668.1|BW663668
EST:     TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG                         GTCAGTGAGGT
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGT
EST: gi|15663580|gb|BI700951.1|BI700951
EST:     CTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG                         GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
genomic: CTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: gi|5820250|gb|AI988456.1|AI988456
EST:     TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG                         GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: gi|37995866|gb|CF807455.1|CF807455
EST:     TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG                         GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGNTAAAAA-CACTGC
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGG-TAAAAAACACTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGTGAAGAAGGGTGATACTATTTTTATTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaatcttgattgactgatacaatcttaatgcatgtaaaaatattttattctgattatgtgattattttaataaattctgttgtgtatgttattg

- - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA