Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatttttttattatggtaaattttatttcattcattatacaatgattactgttttctgtttgccctgaagagtcatgattacttcctcattgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATGTGGGAGAGCCAATGAGCCATTTGGAATCAATTGCTTCCTCTGCG

Basic information

species Glycine max
transcript GLYMA20G33060.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019459|gb|CX706201.1|CX706201
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|23734603|gb|BU765538.1|BU765538
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|254320985|gb|GR827434.1|GR827434
EST:     TGGAAAAATATGTGCTGAG                         GCAGAGAAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATA
genomic: TGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAG-AAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATA
EST: gi|33389653|gb|CA852860.1|CA852860
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|15813546|gb|BI785821.1|BI785821
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|58024592|gb|CX711333.1|CX711333
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|7028356|gb|AW458139.1|AW458139
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|7284548|gb|AW597136.1|AW597136
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTATGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|192296891|gb|FG991917.1|FG991917
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|22523872|gb|BU082683.1|BU082683
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|57574872|gb|CX547847.1|CX547847
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|18041371|gb|BM309665.1|BM309665
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTCAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|21678390|gb|BQ630741.1|BQ630741
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|38193712|gb|CF922918.1|CF922918
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|58021524|gb|CX708265.1|CX708265
EST:     GACAATACCCTGTAGAGACCATTTGTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTCTAAGAAGGCTGTAAGATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|192324820|gb|FK018796.1|FK018796
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|193439103|gb|FK408974.1|FK408974
EST:     AATACCCTGTAGAGACCATTTCTATAGTTGG-AAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: AATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|57575922|gb|CX548893.1|CX548893
EST:     GACAATCCCCCGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|38193120|gb|CF922326.1|CF922326
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: gi|120530840|gb|EH258973.1|EH258973
EST:     GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG                         GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactgttttctgtttgccctgaagagtcatgattacttcctcattgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATGTGGGAGAGCCAATGAGCCATTTGGAATCAATTGCTTCCTCTGCG
                                     cttcctcatt  CT-rich tract
                              atgatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgatttttttattatggtaaattttatttcattcattatacaatgattactgttttctgtttgccctgaagagtcatgattacttcctcattgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATGTGGGAGAGCCAATGAGCCATTTGGAATCAATTGCTTCCTCTGCG

- - - - - - - - - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc