1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gcattatatgagggtgcaaaaagtagaatattgccaatgcaaagtcagaattattctgttttattattgtcactagagtagttttcgtttcacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCCACACTCTCTGGATCATTGTTTACTGTACATGTCTCTCAGATTCACATCG
species | Glycine max |
transcript | GLYMA20G33060.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCCEST: gi|6070532|gb|AW099919.1|AW099919
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCCEST: gi|13180911|gb|BG352251.1|BG352251
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCCEST: gi|213590485|gb|DB968077.1|DB968077
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAA-CACTGCCEST: gi|192318791|gb|FK008003.1|FK008003
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCCEST: gi|209729393|gb|BW663668.1|BW663668
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG GTCAGTGAGGTEST: gi|15663580|gb|BI700951.1|BI700951
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGT
EST: CTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCCEST: gi|5820250|gb|AI988456.1|AI988456
genomic: CTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCCEST: gi|37995866|gb|CF807455.1|CF807455
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCC
EST: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAG GTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGNTAAAAA-CACTGC
genomic: TTGGAAAATACTTGTTTACTGGAAGTGAAACAGCTTCTGTATGGCTGGAGgtaatgcaat ... cacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGG-TAAAAAACACTGC
cagaattattctgttttattattgtcactagagtagttttcgtttcacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCCACACTCTCTGGATCATTGTTTACTGTACATGTCTCTCAGATTCACATCG
ttttcgtttc CT-rich tract
ttattctgttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattatatgagggtgcaaaaagtagaatattgccaatgcaaagtcagaattattctgttttattattgtcactagagtagttttcgtttcacaatgcagGTCAGTGAGGTGGAAGGTGAGGATGTCACCTGTCTGGTAAAAAACACTGCCACACTCTCTGGATCATTGTTTACTGTACATGTCTCTCAGATTCACATCG
- - - - -gagggtg
- - - - - - - - -aaaaagta
- - - - - - - - - - - - - - - - -ccaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcact