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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGCCAGTTGTTGTTACACGTGTTGTGGACTCTATGACTGATAATCTAAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattactttttttgttatatttggtgaatccagtttgatttattttgataatgattgcaatacagaattttataaactctagcatttaatacatgtg...

Basic information

species Glycine max
transcript GLYMA20G33060.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136349|gb|BU926859.1|BU926859
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGAACCTGCGGGGACCATACCCT
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCT
EST: gi|58019459|gb|CX706201.1|CX706201
EST:     AGACCTACTCGTGCTG-AGCCACCAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTNGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AGACCTACTCGTGCTGAAG-CAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|23734603|gb|BU765538.1|BU765538
EST:     AAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|33389653|gb|CA852860.1|CA852860
EST:     CGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: CGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|15813546|gb|BI785821.1|BI785821
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|58024592|gb|CX711333.1|CX711333
EST:     GAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: GAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|7028356|gb|AW458139.1|AW458139
EST:     GCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: GCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|7284548|gb|AW597136.1|AW597136
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTTGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAAACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|192296891|gb|FG991917.1|FG991917
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|22523872|gb|BU082683.1|BU082683
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|57574872|gb|CX547847.1|CX547847
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTNGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|18041371|gb|BM309665.1|BM309665
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|21678390|gb|BQ630741.1|BQ630741
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|58021524|gb|CX708265.1|CX708265
EST:     TCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: TCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|192324820|gb|FK018796.1|FK018796
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|38193120|gb|CF922326.1|CF922326
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
EST: gi|120530840|gb|EH258973.1|EH258973
EST:     AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATG                         GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG
genomic: AAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattact ... ttttgatcagGAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAAGCCAGTTGTTGTTACACGTGTTGTGGACTCTATGACTGATAATCTAAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAATGCAGTGTTGGATGgtaaattactttttttgttatatttggtgaatccagtttgatttattttgataatgattgcaatacagaattttataaactctagcatttaatacatgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG