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GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgtgccttacgtttaaacaaattcctataacattttttaccatgaaaaatttattcctgtaactcttgttagacatttggggtaaagttctct...
species | Glycine max |
transcript | GLYMA20G33060.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|23734603|gb|BU765538.1|BU765538
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|254320985|gb|GR827434.1|GR827434
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: TGGAAAAATATGTGCTGAG GCAGAGAAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAEST: gi|33389653|gb|CA852860.1|CA852860
genomic: TGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAG-AAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATA
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|15813546|gb|BI785821.1|BI785821
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|58024592|gb|CX711333.1|CX711333
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|7028356|gb|AW458139.1|AW458139
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|7284548|gb|AW597136.1|AW597136
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTATGAAGGCTGTAAAATATEST: gi|192296891|gb|FG991917.1|FG991917
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|22523872|gb|BU082683.1|BU082683
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|57574872|gb|CX547847.1|CX547847
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|18041371|gb|BM309665.1|BM309665
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTCAAGAAGGCTGTAAAATATEST: gi|21678390|gb|BQ630741.1|BQ630741
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|38193712|gb|CF922918.1|CF922918
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|58021524|gb|CX708265.1|CX708265
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTGTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTCTAAGAAGGCTGTAAGATATEST: gi|192324820|gb|FK018796.1|FK018796
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|193439103|gb|FK408974.1|FK408974
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: AATACCCTGTAGAGACCATTTCTATAGTTGG-AAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|57575922|gb|CX548893.1|CX548893
genomic: AATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATCCCCCGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|38193120|gb|CF922326.1|CF922326
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATATEST: gi|120530840|gb|EH258973.1|EH258973
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
EST: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAG GCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
genomic: GACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgt ... ttgtgtgcagGCAGAGAAAGTTCATAATCAAGATTTGTATTTTAAGAAGGCTGTAAAATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTGACGCAATTCTCCTTGGAGCAGAGACCCTGCGGGGACAATACCCTGTAGAGACCATTTCTATAGTTGGAAAAATATGTGCTGAGgttagtttgtgccttacgtttaaacaaattcctataacattttttaccatgaaaaatttattcctgtaactcttgttagacatttggggtaaagttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggggt