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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGACAAATTGGAGAAACTCAGAGAGAGGATGATAAAAGTGCGCGAACTCTTTCGTGATACTGATTCGACCGAATTTGTCATTGTTACAATCCCCACGgtatgacttataactggtgcatataatgatataatggtgaattgacttataatttagtatcaccaaccctaccgagacgaattgaaggattttggcttta...

Basic information

species Glycine max
transcript GLYMA20G32200.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G10350.2 (Arabidopsis thaliana), 5'ss of exon 8
GCTGACAAATTGGAGAAACTCAGAGAGAGGATGATAAAAGTGCGCGAACTCTTTCGTGATACTGATTCGACCGAATTTGTCATTGTTACAATCCCCACGgtatgacttataactggtgc-------atataatgatataatggtgaattgactt-ataatttagtatcaccaaccctaccgagac---gaattgaaggattttggct--tta---------------------
|| ||||||||||| ||||| ||||| |||||| | ||||| ||||| || || ||||| || || || || ||||| |||||||| || ||||| ||||||  |  ||  ||  |          || |  |  |||  |   ||||  | |  ||    |   | |  |   || |    |      | |||     |    |||  |||                     
GCCGACAAATTGGAAAAACTAAGAGAAAGGATGGTTAAAGTTCGCGAGCTTTTCCGTGACACAGAGTCAACAGAATTCGTCATTGTCACTATCCCAACGgtaatatctaccacatgcatctccttgatgtcctcctatcttcaagaataaaatccattggctgagaacttccgtccaatgttggtcttaagttggcatctcactgctcattactttttgtttatctcataaag

upper sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 9
GCTGACAAATTGGAGAAACTCAGAGAGAGGATGATAAAAGTGCGCGAACTCTTTCGTGATACTGATTCGACCGAATTTGTCATTGTTACAATCCCCACGgtatgacttataactggtgcatataatgatataatggtgaattgacttataatttagtatcaccaaccctaccgagacgaattgaaggattttggcttta-
||||||||||| |||  ||| || ||||| ||| |||||||||| || || || ||||| || || ||||| ||||||||||| || |||||||| ||||||  |   || |        | |    |  | ||  |   |     ||  |    || |          | |   |   ||       || |  | ||| 
GCTGACAAATTAGAGCGACTAAGGGAGAGAATGGTAAAAGTGCGGGAGCTTTTCCGTGACACAGACTCGACAGAATTTGTCATAGTAACAATCCCTACGgtaaaaaccattataaaaatgttttggcac-tgattatttctgtttctagtaaagggtgtgtttggttgcagctgcaaatatattgttgttataaccttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208341366|gb|GE134120.1|GE134120
EST:     TCTTTCGTGATACTGATTCGACCGAATTTGTCATTGTTACAATCCCCACG                         GTGATGGCAATTAGTGAGTCATCTAGATTGAGTGCTTCCCTGAAGAAGGAA
genomic: TCTTTCGTGATACTGATTCGACCGAATTTGTCATTGTTACAATCCCCACGgtatgactta ... actccctcagGTGATGGCAATTAGTGAGTCATCTAGATTGAGTGCTTCCCTGAAGAAGGAA
EST: gi|193404452|gb|FK365361.1|FK365361
EST:     TTCGACCGAATTTGTCATTGTTGCAATCCCCACG                         GTGATGGCAATTAGTGAGTCATCTAGATTGAGTGCTTCCCTGAAGAAGGAA
genomic: TTCGACCGAATTTGTCATTGTTACAATCCCCACGgtatgactta ... actccctcagGTGATGGCAATTAGTGAGTCATCTAGATTGAGTGCTTCCCTGAAGAAGGAA