Sequence
atgc intronic sequence ATGC exonic sequenceTTCCCTGAAGAAGGAAAATGTTCCTGTGAAGAGACTTATTGTCAACCAGATTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaattgttttctcttttatttttgcatggattgtatctgagtggttaactataatgtaattcattttgaactgatagctgagcataccaaacaa...
Basic information
species | Glycine max |
transcript | GLYMA20G32200.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g51100.1 (Oryza sativa), 5'ss of exon 9
TTCCCTGAAGAAGGAAAATGTTCCTGTGAAGAGACTTATTGTCAACCAGATTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtact-ttaattgttttctcttttatttttgcatggattgtatctgagtggttaactataatgtaattcattttgaactgatagctgagcataccaaacaa
|||||| | || |||| |||||| || |||||||| ||||| ||||| ||||| ||||| || |||| || || || || |||||||| |||||||||||| || || | | | | || | | ||||| | || || | | ||| | || | | | || | | |
TTCCCTAAGAAATGAAAGTGTTCCCGTTAAGAGACTCATTGTTAACCAAATTCTACCACCTTCGTCATCAGACTGTAAATTCTGTGCTATAAAAAGAAAGgtagagttcataatctgccgaaatgattctctagtaattgtctgc---tgcttgtagaaactgtgttgcagggccatttaccatcttctttcatccag---
upper sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G105539_T02 (Zea mays), 5'ss of exon 1
TTCCCTGAAGAAGGAAAATGTTCCTGTGAAGAGACTTATTGTCAACCAGATTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaattgttttctcttttatttttgcatggattgtatctgagtggttaactataatgtaattcatt---ttgaactgatagctgagcataccaaacaa---------
||| || | ||||||| ||||||||| | |||||| ||||| ||||| |||| ||||| || ||||| || || || || ||| |||| ||||||||||||| || || | | | | || | ||| | | | | | | | | || || | || | | || | | || ||
TTCGTTGCAAAAGGAAAGTGTTCCTGTAAGGAGACTCATTGTGAACCAAGTTCTGCCACCTTCAACATCGGACTGTAAATTCTGTTCTATAAAAAGAAAGgtac---aaatgatatggcaccgacagtt---taaattttcagttaatacctggttcttgtaaaaaccactagcctgcaggaaaagttatgtatctcattttcttcacacag
upper sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 10
TTCCCTGAAGAAGGAAAATGTTCCTGTGAAGAGACTTATTGTCAACCAGATTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaattgttttctcttttatttttgcatggattgtatctgagtggttaactataatgtaattcattttgaactgatagctgagcataccaaacaa---------
|||| |||||| ||||||||||||||| |||| || || ||||| ||| ||||||| |||||||| || || ||||| |||||||| ||||| || |||||| | ||| |||| || | || || | | | || || | | | ||| | ||| || |||| | || ||
TTCCTTGAAGAGGGAAAATGTTCCTGTCAAGAAGCTAATAGTCAATCAGGTTCTTCCCCCATCTACCTCAGACTGCAAATTTTGTGCGATGAAGAGGAAGgta--taaatctatttcactgtctaattcacacatgat-------aatattttacagcatactggccaactttaccttcataacttagcaaagcactgaatttgggatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193404452|gb|FK365361.1|FK365361EST: TTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAG GATCAAATGCGTGCTCTTGATATAGTTCAGAACGATCCAGAACTCTCCAGC
genomic: TTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaat ... aacttttcagGATCAAATGCGTGCTCTTGATATAGTTCAGAACGATCCAGAACTCTCCAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCCCTGAAGAAGGAAAATGTTCCTGTGAAGAGACTTATTGTCAACCAGATTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaattgttttctcttttatttttgcatggattgtatctgagtggttaactataatgtaattcattttgaactgatagctgagcataccaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA