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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaactacatgtgtagccttatagttctgatgatgcttgcatgttggattatgctctgtgtaacacaagctttgcaaattgtactatagGATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATCCTCTTTTTGCTCTTGAA

Basic information

species Glycine max
transcript GLYMA20G32200.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400268|gb|BM177050.1|BM177050
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATCCTCTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaactaca ... tgtactatagGATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATCCTCTT
EST: gi|193661507|gb|FK601775.1|FK601775
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATC
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaactaca ... tgtactatagGATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATC
EST: gi|7692844|gb|AW760943.1|AW760943
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATCCTCTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaactaca ... tgtactatagGATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATCCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgcatgttggattatgctctgtgtaacacaagctttgcaaattgtactatagGATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATCCTCTTTTTGCTCTTGAA
                       gtgtaac  putative branch site (score: 3)
                                         aaattgta  TA-rich tract