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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGCAATTTCTTGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGgtgagcaaaaagctgatagttatatatttcacatcacctttgttttataacattatcataggatttacacatgttcccaaacag

Basic information

species Glycine max
transcript GLYMA20G32200.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G105539_T01 (Zea mays), 5'ss of exon 5
GTTATGCAATTTCTTGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGgtgagcaaaaagctgatagttatatatttcacatcacctttgttttata---acattatca--taggatttacacatgttcccaaacag
||||||||||| |||||| |||| ||||| |||||||||| ||| || |||||||| || || ||||||||    || || |  |   || | |||   |  |    | |   |   |   |||||||||  ||  |||  |  |  |||    ||||
GTTATGCAATTCCTTGAAGCACAAGAATACAGCATGTTTAGTCGCATTGTATTTGACACTGCCCCTACGgt----aataaccctaccattgtgtatcaaatgttgaatctacatgggagtcacattatcagctattattcgctaac-ttctttgacag

upper sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 6
GTTATGCAATTTCTTGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGgtgagcaaaaagctgatagttatatatttcacatcacctttgttttataacattatcataggatttacacatgttcccaaacag
||||||||||||||||| ||||| |||||||| || ||||||||||| || |||||||| ||||| ||||| || ||||| |        | |||||||||||| | ||    | ||| |||   | | |  || ||| ||  ||   |||||
GTTATGCAATTTCTTGAGTCACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACGgtaaggaaaaacca-------acatatttcacatctctttc---tcatatcatccac-tggacttgacaaattgtcattaacag