Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaggcattttatgtactgtgattaattatttcattgctaattattcatgtaataatccattttttgctttcctaacaattaaaagcctcttgtcagGTTATGCAATTTCTTGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG

Basic information

species Glycine max
transcript GLYMA20G32200.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32200.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g51100.1 (Oryza sativa), 3'ss of exon 4
gcaggcattttatgtactgtgattaattatttcattgctaattattcatgtaataatccattttttgctttcctaacaattaaaagcctcttgt---cagGTTATGCAATTTCTTGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG
                 || ||  ||  |  |||| |     | | | ||   | |||   || ||  | | ||| ||  | |   |  ||||    |||||||||||||| |||||| |||| || |||||||||||||  || || || ||||| || || || |||
----------------gtgagaaaaagcaggtcatgg---gctttacctg-gttcatcttgttgttcttcttctagcatgtgactcctacttgcatccagGTTATGCAATTCCTTGAAGCACAAGAGTATAGCATGTTTAGACGCATTGTTTTTGACACTGCTCCAACG

upper sequence: GLYMA20G32200.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G105539_T01 (Zea mays), 3'ss of exon 4
gcaggcattttatgtactgtgattaattatttcattgctaattattcatgtaataatccattttttgctttcctaacaattaaaagcctcttgtcagGTTATGCAATTTCTTGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG
| | | |   | || |   |   | ||  | ||  |||| || |||| | | ||  |   ||| |  | | | |     ||    | ||||   |||||||||||||| |||||| |||| ||||| |||||||||| ||| || |||||||| || || ||||||
gtaagaaggatgtgca---tagcttatggtatccctgcttatcattcctctgattgta-gtttgtgacctccatg----ttgcgtgtctct---cagGTTATGCAATTCCTTGAAGCACAAGAATACAGCATGTTTAGTCGCATTGTATTTGACACTGCCCCTACG

upper sequence: GLYMA20G32200.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 3'ss of exon 5
--gcaggcattttatgtactgtgattaattatttcattgctaattattcatgtaataatccattttttgctttcctaacaatta-aaagcctcttgtcagGTTATGCAATTTCTTGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG
   |       || |||  | |   |  |  | |     || ||| |   |   ||      ||  |||||| |  |   || | ||| | | ||  |||||||||||||||||||| ||||| |||||||| || ||||||||||| || |||||||| ||||| |||
gttcgcctggcttttgtgatttctctggtagtattgcatctgattgtattttggatt-----ttccttgcttcctcactgatgacaaaacatgtttccagGTTATGCAATTTCTTGAGTCACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcatgtaataatccattttttgctttcctaacaattaaaagcctcttgtcagGTTATGCAATTTCTTGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG
                            tcctaac  putative branch site (score: 1)
                                            cctcttgtc  putative PPT
        taataatccatttttt  TA-rich tract