Sequence
atgc intronic sequence ATGC exonic sequencegtaagatttatgcctggagttagtattgcgtttagtttcatcttaattgttcaccatttattatatctttattgtgtagGCTGACAAATTGGAGAAACTCAGAGAGAGGATGATAAAAGTGCGCGAACTCTTTCGTGATACTGATTCGACCGAATTTGTCATTGTTACAATCCCCACG
Basic information
species | Glycine max |
transcript | GLYMA20G32200.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32200.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G10350.2 (Arabidopsis thaliana), 3'ss of exon 7
gtaaga-tttatgcctggagttagtattgcgtttagtttcatcttaattgttcaccatttattatatctttattgtgtagGCTGACAAATTGGAGAAACTCAGAGAGAGGATGATAAAAGTGCGCGAACTCTTTCGTGATACTGATTCGACCGAATTTGTCATTGTTACAATCCCCACG
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gtaagtctttgtacattg-gctgatatagtattc---ctgttttcatttggttaaaattttctttatggatgtcac--agGCCGACAAATTGGAAAAACTAAGAGAAAGGATGGTTAAAGTTCGCGAGCTTTTCCGTGACACAGAGTCAACAGAATTCGTCATTGTCACTATCCCAACG
upper sequence: GLYMA20G32200.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 3'ss of exon 8
gtaagatttat--gcctggagttagtattgcgtttagtttcatct-taattgttcaccatt-tattatatctttattgtgtagGCTGACAAATTGGAGAAACTCAGAGAGAGGATGATAAAAGTGCGCGAACTCTTTCGTGATACTGATTCGACCGAATTTGTCATTGTTACAATCCCCACG
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gtaagtttgatttgtatggagctggtaccctatgatgttctaaaaactgtcactaaccaatatacttttgcttcattatgtagGCTGACAAATTAGAGCGACTAAGGGAGAGAATGGTAAAAGTGCGGGAGCTTTTCCGTGACACAGACTCGACAGAATTTGTCATAGTAACAATCCCTACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208341366|gb|GE134120.1|GE134120EST: GAAACCCGACAGAATGCT GCTGACAAATTGGAGAAACTCAGAGAGAGGATGATAAAAGTGCGCGAACTC
genomic: GAAACCCGACAGAATGCTgtaagattta ... tattgtgtagGCTGACAAATTGGAGAAACTCAGAGAGAGGATGATAAAAGTGCGCGAACTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgcgtttagtttcatcttaattgttcaccatttattatatctttattgtgtagGCTGACAAATTGGAGAAACTCAGAGAGAGGATGATAAAAGTGCGCGAACTCTTTCGTGATACTGATTCGACCGAATTTGTCATTGTTACAATCCCCACG
tcttaat putative branch site (score: 3)
tctttatt putative PPT
atttattatatcttta TA-rich tract