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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGCTGCTTCACTTGCTGTTAAATTTGCCAATAATGGACACCCTACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaactacatgtgtagccttatagttctgatgatgcttgcatgttggattatgctctgtgtaacacaagctttgcaaattgtactatag

Basic information

species Glycine max
transcript GLYMA20G32200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G10350.2 (Arabidopsis thaliana), 5'ss of exon 1
CTGTGCTGCTTCACTTGCTGTTAAATTTGCCAATAATGGACACCCTACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaactacatgtgtagccttatagttctgatgatgct-tgcatgttggattatgctctgtgtaacacaagctttgcaaattgtactatag---------
 |||||||||||  | ||||| | ||| ||||| ||||||||||| ||||| || || || || |||||||| ||||| ||||| ||||||||||||||||| ||| |      |  |  || |    ||| ||   | |   |||| ||| | | | |   ||  |   |  || | | |  |  | | |         
TTGTGCTGCTTCTTTAGCTGTGAGATTCGCCAACAATGGACACCCAACTCTGGTTGTATCTACAGATCCAGCACATTCCTTGAGCGATTCTTTTGCTCAGgtaaacgaagaaatt--ctataaaaaggtgaagactttgtttttgtttgatgaagatatacatatgattggtgtttctattgtttttgttgattttgtag

upper sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 2
CTGTGCTGCTTCACTTGCTGTTAAATTTGCCAATAATGGACACCCTACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaactacatgtgtagccttatagttctgatgatgcttgcatg----ttggattatgctctgtgtaacacaagctttgcaaattgtactatag----------------------------------------------------
 |||||||| |||||||| || |||||||| || ||||| ||||| || || |||||||| || |||||||| |||||| |||||||||||||||| ||||||      |  | |  | || || | ||| | | | |  |||      ||  | |   ||  |    |     |  |  || |||||  |||                                                     
TTGTGCTGCATCACTTGCCGTAAAATTTGCGAACAATGGGCACCCCACACTAGTGGTTTCAACTGATCCAGCACATTCTCTGAGTGATTCTTTTGCCCAGgtt-----taaatattactttctaatactggtcaagttatcataacttctgtttaactatcctttctgcttttacactagaatttgtatgataaattgcttcatttctttgtgtgcatgtctgtatgtggctcggatatgattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400268|gb|BM177050.1|BM177050
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATCCTCTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaactaca ... tgtactatagGATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATCCTCTT
EST: gi|193661507|gb|FK601775.1|FK601775
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATC
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaactaca ... tgtactatagGATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATC
EST: gi|7692844|gb|AW760943.1|AW760943
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATCCTCTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaactaca ... tgtactatagGATTTGACAGGGGGTGCATTGGTGCCAGTAGAAGGACCTGATTATCCTCTT