1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGTAACATGGGAAGGATGATTGAAGAAATGGAGAGTAAGCTGAGGAACTCACTAGATCAGgtacttcttgattgtataggattcaactgcatgcttcatgtatttgagatcagcttcttcactttttggtgtaattgttctttagtggggaagggtttgggtatttatcaaacttgatattcagttcgattgtgcctatgacattccaaactataaggcatgttaatgcatgttacag
species | Glycine max |
transcript | GLYMA20G31170.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAGGATGATTGAAGAAATGGAGAGTAAGCTGAGGAACTCACTAGATCAG GTATACTTTGGGAAAACAAGAGAAA-TGGTTTGCACACTGAGACCACCATCEST: gi|192303572|gb|FG995950.1|FG995950
genomic: GAAGGATGATTGAAGAAATGGAGAGTAAGCTGAGGAACTCACTAGATCAGgtacttcttg ... catgttacagGTATACTTTGGGAAAACAAGAGAAAATGGTTTGCACACTGAGACCACCATC
EST: GAAGGATGATTGAAGAAATGGAGAGTAAGCTGAGGAACTCACTAGATCAG GAATACTTTGGGAAAACAAGGGAAA-TGGTTTGCACACTGAGACCACCATT
genomic: GAAGGATGATTGAAGAAATGGAGAGTAAGCTGAGGAACTCACTAGATCAGgtacttcttg ... catgttacagGTATACTTTGGGAAAACAAGAGAAAATGGTTTGCACACTGAGACCACCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGTAACATGGGAAGGATGATTGAAGAAATGGAGAGTAAGCTGAGGAACTCACTAGATCAGgtacttcttgattgtataggattcaactgcatgcttcatgtatttgagatcagcttcttcactttttggtgtaattgttctttagtggggaagggtttgggtatttatcaaacttgatattcagttcgattgtgcctatgacattccaaactataaggcatgttaatgcatgttacag
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA