1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atttaactattttgtgtgttcgtcttgctgtctatataaattcaattatttagctattttgttttaaaacaatatgcaccattaatggataatgtcatagGTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGAAGGTTTCGTAGCCTGCTTTTTAATAAAGAAAG
species | Glycine max |
transcript | GLYMA20G31170.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGAAGCTTGAAATTGAAGCAAATGACATATTTGCAATATATCGTGACCA GTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGAEST: gi|192303571|gb|FG995949.1|FG995949
genomic: CGGAAGCTTGAAATTGAAGCAAATGACATATTTGCAATATATCGTGACCAgtgaggtcct ... aatgtcatagGTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGA
EST: CGGAAGCTTGAAATTGAAGCAAATGACATATTTGCAATATATCGTGACCA GTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGAEST: gi|192303572|gb|FG995950.1|FG995950
genomic: CGGAAGCTTGAAATTGAAGCAAATGACATATTTGCAATATATCGTGACCAgtgaggtcct ... aatgtcatagGTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGA
EST: CGGAAGCTTGAAATTGAAGCAAATGACATATTTGCAATATATCGTGACCA GTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGAEST: gi|192299554|gb|FG987715.1|FG987715
genomic: CGGAAGCTTGAAATTGAAGCAAATGACATATTTGCAATATATCGTGACCAgtgaggtcct ... aatgtcatagGTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGA
EST: CGGAAGCTTGAAATTGAAGCAAATGACATATTTGCAATATATCGTGACCA GTGAGGTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGAT
genomic: CGGAAGCTTGAAATTGAAGCAAATGACATATTTGCAATATATCGTGACCAgtgaggtcct ... aatgtcatagGT-A--T-T-ATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGAT
ttatttagctattttgttttaaaacaatatgcaccattaatggataatgtcatagGTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGAAGGTTTCGTAGCCTGCTTTTTAATAAAGAAAG
cattaat putative branch site (score: 3)
tattttgttttaaaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaactattttgtgtgttcgtcttgctgtctatataaattcaattatttagctattttgttttaaaacaatatgcaccattaatggataatgtcatagGTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGAAGGTTTCGTAGCCTGCTTTTTAATAAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - tgtgtgt
- - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacca