1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtctcgctttttcttttgccctaaatctttcttccatttccctcaattttgggtacaagaggaatgaatgtttgttgtctcacgatttgcttttcgaactttcagGTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAG
species | Glycine max |
transcript | GLYMA20G31170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGACAACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCCCTCCAG GTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAATEST: gi|193636239|gb|FK580762.1|FK580762
genomic: TGCCTGACAACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCCCTCCAGgtctcgcttt ... gaactttcagGTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAAT
EST: TGCCTGACAACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCCCTCCAG GTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAATEST: gi|192303571|gb|FG995949.1|FG995949
genomic: TGCCTGACAACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCCCTCCAGgtctcgcttt ... gaactttcagGTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAAT
EST: TGCCTGACAACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCCCTCCAG GTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAATEST: gi|193351969|gb|FK318798.1|FK318798
genomic: TGCCTGACAACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCCCTCCAGgtctcgcttt ... gaactttcagGTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAAT
EST: GCCTGACAACTCCTCCGATCTCCTCTCTCAAAGTCGATCAGCCC-TCCAG GTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGEST: gi|192299554|gb|FG987715.1|FG987715
genomic: GCCTGACAACTCCTCCGATCTCCTCTCTCAA-GTCGATCAGCCCCTCCAGgtctcgcttt ... gaactttcagGTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTG
EST: TGCCTGACAACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCCCTCCAG GTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAAT
genomic: TGCCTGACAACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCCCTCCAGgtctcgcttt ... gaactttcagGTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAAT
gggtacaagaggaatgaatgtttgttgtctcacgatttgcttttcgaactttcagGTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAG
gtctcac putative branch site (score: 3)
cttttcg putative PPT
aatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcgctttttcttttgccctaaatctttcttccatttccctcaattttgggtacaagaggaatgaatgtttgttgtctcacgatttgcttttcgaactttcagGTTCTGTGCGATGTGGAATGCGGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG