1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGGCTCAAAGACAGGGCAGGGCCGACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatcattccatttaagactaaacatgataaatgcagatgtataatagtaacttttaatacattgggaaacttaaacatctctatttagttctattttttctgattcttgcaagtttatttcattaattcatagtcctcccatttttttgttaatttag
species | Glycine max |
transcript | GLYMA20G31170.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAG GTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTTEST: gi|208131590|gb|GD930727.1|GD930727
genomic: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatc ... gttaatttagGTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTT
EST: CGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAG GTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTTEST: gi|9901313|gb|BE610281.1|BE610281
genomic: CGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatc ... gttaatttagGTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTT
EST: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAG GTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTTEST: gi|192303571|gb|FG995949.1|FG995949
genomic: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatc ... gttaatttagGTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTT
EST: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAG GTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTTEST: gi|208081444|gb|GD884324.1|GD884324
genomic: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatc ... gttaatttagGTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTT
EST: CGGGGATATTTAGTAGGTAAGGTGCATGGGATGCTATACATGTTATAGAG GTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTTEST: gi|192303572|gb|FG995950.1|FG995950
genomic: CGGGGATATTTAG-AGG-AAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatc ... gttaatttagGTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTT
EST: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAG GTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTTEST: gi|193582704|gb|FK537386.1|FK537386
genomic: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatc ... gttaatttagGTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTT
EST: CGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAG GTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTTEST: gi|193627616|gb|FK576300.1|FK576300
genomic: CGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatc ... gttaatttagGTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTT
EST: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAG GTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTTEST: gi|192299554|gb|FG987715.1|FG987715
genomic: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatc ... gttaatttagGTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTT
EST: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAG GTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTT
genomic: GACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatc ... gttaatttagGTGGGACCAGAGGAAGAAGAAAACACCAATTATCGTTTAACCAGTACAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCTCAAAGACAGGGCAGGGCCGACGGGGATATTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGgtaaagtatcattccatttaagactaaacatgataaatgcagatgtataatagtaacttttaatacattgggaaacttaaacatctctatttagttctattttttctgattcttgcaagtttatttcattaattcatagtcctcccatttttttgttaatttag
- - - - - - - - - - - - - - - - - - AGAGGA