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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACACCAATTATCGTTTAACCAGTACAGTTATGCTGACTCTGACTACAAATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAGgcacgttcaatcagaattagctcttgttggcaattagatcatttagttaacacttggatgctgagttttttctgtcttgagaagccacatggcccacatc...

Basic information

species Glycine max
transcript GLYMA20G31170.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31170.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g01970.t01 (Vitis vinifera), 5'ss of exon 6
AAACACCAATTATCGTTTAACCAGTACAGTTATGCTGACTCTGACTACAAATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAGgcacgttcaatcagaattagctcttgttggcaattagatcatttagttaacacttggatgct-gagttttttctgtcttgaga-agccacatggcccacatc--
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AATAACCCATTACTGTTTAACCAGTACCGTTATGCTGTCATTGACTACAAATGATCAGTCATCAGGCACATTCAGTTTGTCAGGATCAATTCGAAGACAGgtacttatgtttgttatttagt----ttaagaatttaacttttatgctcattaatgaatgtttgaaacatatctatgaaaagttaggaagaagcacaacattac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22927054|gb|BU544193.1|BU544193
EST:     ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAG                         ATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGTAACATGGGAAGG
genomic: ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAGgcacgttcaa ... tatattttagATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGTAACATGGGAAGG
EST: gi|208131590|gb|GD930727.1|GD930727
EST:     ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAG                         ATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGTAACATGGGAAGG
genomic: ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAGgcacgttcaa ... tatattttagATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGTAACATGGGAAGG
EST: gi|208081444|gb|GD884324.1|GD884324
EST:     ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAG                         ATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGTAACATGGGAAGG
genomic: ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAGgcacgttcaa ... tatattttagATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGTAACATGGGAAGG
EST: gi|192303572|gb|FG995950.1|FG995950
EST:     ATAATGAGTCATCCGGAACTTTCAGTTTATTTGGTTCAATTAGGCGTCAG                         ATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGTAACATGGGAAGG
genomic: ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAGgcacgttcaa ... tatattttagATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGTAACATGGGAAGG
EST: gi|193582704|gb|FK537386.1|FK537386
EST:     ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAG                         ATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGT
genomic: ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAGgcacgttcaa ... tatattttagATGAGTATGAAGCTATCAGTTGCTGATGGGCATCTTTGT
EST: gi|193627616|gb|FK576300.1|FK576300
EST:     ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAG                         ATGAGTATGAAGCTATC
genomic: ATAATGAGTCATCCGGAACTTTCAGTTTATCTGGTTCAATTAGGCGTCAGgcacgttcaa ... tatattttagATGAGTATGAAGCTATC