1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cccccccccccacccccccgcacacacacaattttccctttttaatgtgtttactattcaaggacggtttaaacttattgttgtttgtatgtctctgcagATCACCTTGGTCCAATAAATACCATCCACCATTAGAAGATGGGTCCCTCCCTTCTTCAGAGTTGCGGAAGCTTGAAATTGAAGCAAATGACATATTTGCA
species | Glycine max |
transcript | GLYMA20G31170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAG ATCACCTTGGTCCAATAAATACCATCCACCATTAGAAGATGGGTCCCTCCCEST: gi|193636239|gb|FK580762.1|FK580762
genomic: GGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAGgttcatttca ... gtctctgcagATCACCTTGGTCCAATAAATACCATCCACCATTAGAAGATGGGTCCCTCCC
EST: GGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAG ATCACCTTGGTCCAATAAATACCATCCAEST: gi|192303571|gb|FG995949.1|FG995949
genomic: GGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAGgttcatttca ... gtctctgcagATCACCTTGGTCCAATAAATACCATCCA
EST: GGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAG ATCACCTTGGTCCAATAAATACCATCCACCATTAGAAGATGGGTCCCTCCCEST: gi|192299554|gb|FG987715.1|FG987715
genomic: GGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAGgttcatttca ... gtctctgcagATCACCTTGGTCCAATAAATACCATCCACCATTAGAAGATGGGTCCCTCCC
EST: GGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAG ATCACCTTGGTCCAATAAATACCATCCACCATTAGAAGATGGGTCCCTCCC
genomic: GGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCCGACTCTTACAGgttcatttca ... gtctctgcagATCACCTTGGTCCAATAAATACCATCCACCATTAGAAGATGGGTCCCTCCC
tgtgtttactattcaaggacggtttaaacttattgttgtttgtatgtctctgcagATCACCTTGGTCCAATAAATACCATCCACCATTAGAAGATGGGTCCCTCCCTTCTTCAGAGTTGCGGAAGCTTGAAATTGAAGCAAATGACATATTTGCA
tgtctct CT-rich tract
tttaaacttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccccccccccacccccccgcacacacacaattttccctttttaatgtgtttactattcaaggacggtttaaacttattgttgtttgtatgtctctgcagATCACCTTGGTCCAATAAATACCATCCACCATTAGAAGATGGGTCCCTCCCTTCTTCAGAGTTGCGGAAGCTTGAAATTGAAGCAAATGACATATTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
ccccccc
- - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - -ttccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt