Sequence
atgc intronic sequence ATGC exonic sequenceATTAGACAAGAGAAGTTTTTTCCTGTGGCAATTCTTTTCTCTGGTGGCCTGGACTCTATGATACTTGCAGCATTATTGGATAAATGCATGGATCCCAGCTgtgagtgatttcaaattaacttaatttacctgctcctatgctgagtatatatggtacaatctttattagttccttgtttggttttgagacgtgaagtaggagaactagttgagttgacatattttaattttggaaccttcagttaagctgtttttaatctattttgaattgacag
Basic information
species | Glycine max |
transcript | GLYMA20G03040.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G03040.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g38630.1 (Oryza sativa), 5'ss of exon 8
ATTAGACAAGAGAAGTTTTTTCCTGTGGCAATTCTTTTCTCTGGTGGCCTGGACTCTATGATACTTGCAGCATTATTGGATAAATGCATGGATCCCAGCTgtgagt---gatttcaaattaact-taatttacctgctcctatgctgagt---atatatggtacaatctttattagttccttgtttggt--tttgaga-cgtgaagtaggagaactagttgagttgacatattttaattttggaaccttca-gttaagctgtttttaatctattttgaattgacag---------------
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CTAAAGGATGATGAGCTAGCCCCAATAGCAATCCTTTTCTCTGGTGGCTTGGACTCCATGATACTTGCAGCATTATTAGACCAGTGCCTTGATTCCAAATgtaagttcaactattgcttttactgtttcttgttcaatactgttagcagttcaatatattagccaaccgttgcttttattgtgttcagtactctaagaattttaaatttttatagtacattagtgcaagaagattagctgcttatgctacacactatacttcaat--atatatgaggaacagttattgaaattttgaacag
upper sequence: GLYMA20G03040.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g00390.t01 (Vitis vinifera), 5'ss of exon 7
ATTAGACAAGAGAAGTTTTTTCCTGTGGCAATTCTTTTCTCTGGTGGCCTGGACTCTATGATACTTGCAGCATTATTGGATAAATGCATGGATCCCAGCTgtgagtgatttcaaattaacttaatttacctgctcctatgctgagtatatatggtacaatctttattagttccttgtttggttttgagacgtgaagtaggagaactagttgagttgacatattttaattttggaaccttcagttaagctgtttttaatctattttgaattgacag
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CTTCAACAAGAAGAACTAGTTCCTGTGGCCATTCTTTTTTCTGGTGGATTAGATTCAATGATACTTGCAGCATTATTGGATGAGTGCCTACAACCCAGCTgtaagtt-tgttgcataagctagggtatgttgttttttcatt------------taaaatttttgttc--------tttggtttta----------tataacatctcattaagctcacatgcttctatagc--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23064094|gb|BU578867.1|BU578867EST: GGACTCTATGATACTTGCAGCATTATTGGATAAATGCATGGATCCCAGCT ATGAAATTGATCTACTTAATGTAAGTTTTGATGGGCAGTTAGCTCCTGATA
genomic: GGACTCTATGATACTTGCAGCATTATTGGATAAATGCATGGATCCCAGCTgtgagtgatt ... gaattgacagATGAAATTGATCTACTTAATGTAAGTTTTGATGGGCAGTTAGCTCCTGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTAGACAAGAGAAGTTTTTTCCTGTGGCAATTCTTTTCTCTGGTGGCCTGGACTCTATGATACTTGCAGCATTATTGGATAAATGCATGGATCCCAGCTgtgagtgatttcaaattaacttaatttacctgctcctatgctgagtatatatggtacaatctttattagttccttgtttggttttgagacgtgaagtaggagaactagttgagttgacatattttaattttggaaccttcagttaagctgtttttaatctattttgaattgacag
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