1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTGGCTGGGGTTACATGAGGAAATGAGACTCGACATGCAAAGAATTTGGAGAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctcaaagtcgataaaaaatcagtatggacctacccgttacttatcaacttttttttttccttctcttttttgttttgcttctatttttcctttag
species | Glycine max |
transcript | GLYMA20G03040.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG GCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATTEST: gi|207800401|gb|GD775406.1|GD775406
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
EST: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG GCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATTEST: gi|193408939|gb|FK371599.1|FK371599
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
EST: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG GCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATTEST: gi|120529547|gb|EH257681.1|EH257681
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
EST: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG GCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATTEST: gi|193414375|gb|FK377403.1|FK377403
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
EST: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG GCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATTEST: gi|208268149|gb|GE068990.1|GE068990
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
EST: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG GCTAGATTTCCATTCTTGGATGAG
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGCTGGGGTTACATGAGGAAATGAGACTCGACATGCAAAGAATTTGGAGAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctcaaagtcgataaaaaatcagtatggacctacccgttacttatcaacttttttttttccttctcttttttgttttgcttctatttttcctttag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG