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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgctcaaagtcgataaaaaatcagtatggacctacccgttacttatcaacttttttttttccttctcttttttgttttgcttctatttttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATTCCATTGTGGGAGGTAGCCAACCTCGATCAACCTAGTGGCATTGGTGATA

Basic information

species Glycine max
transcript GLYMA20G03040.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03040.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0011g00390.t01 (Vitis vinifera), 3'ss of exon 11
gtaatgctcaaagtcgataaaaaatcagtatggacctacccgttacttatcaacttttttttttccttctcttttttgttttgcttctatttttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATTCCATTGTGGGAGGTAGCCAACCTCGATCAACCTAGTGGCATTGGTGATA
                          ||||   ||         |  |||||  |  ||   |  |   | ||    || ||| || | | |||    |||||||||||||| ||||||||||||||||| ||||||    ||||  |||||||  |||||||||| |||||||| |||||||| ||||| | |||||| |
------------------------gtagtactaacagttttaaaaaatatca-ttaattgcctggcacatgttgaccgtattgattttttatttttgctagGCTAGATTTCCTTTCTTGGATGAGGATGTCATAAGGACACTGCTTGATATTCCCCTGTGGGAGGTTGCCAACCTTGATCAACCAAGTGGAACTGGTGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193510434|gb|FK469872.1|FK469872
EST:     GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG                         GCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
EST: gi|207800401|gb|GD775406.1|GD775406
EST:     GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG                         GCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
EST: gi|193408939|gb|FK371599.1|FK371599
EST:     GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG                         GCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
EST: gi|120529547|gb|EH257681.1|EH257681
EST:     GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG                         GCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
EST: gi|193414375|gb|FK377403.1|FK377403
EST:     GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG                         GCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATT
EST: gi|208268149|gb|GE068990.1|GE068990
EST:     GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAG                         GCTAGATTTCCATTCTTGGATGAG
genomic: GAAGAAATTTAGGGAGAGATGATAGATGTATTGCTGATAATGGGAAGGAGgtaatgctca ... tttcctttagGCTAGATTTCCATTCTTGGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcaacttttttttttccttctcttttttgttttgcttctatttttcctttagGCTAGATTTCCATTCTTGGATGAGGATGTTATAAGGCTTTTGCTCAATATTCCATTGTGGGAGGTAGCCAACCTCGATCAACCTAGTGGCATTGGTGATA
       cttttttttttccttc  CT-rich tract
     aactttttttttt  TA-rich tract