1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...taatttgtttataagttgcacatatgtatgtagcttggttaattaccactcttttgcctggtgattaatgtgtcattctgttatatgtttattgttgtagTTTGGTTCAAGAATTGCAAGGGAATCAAATCGGAAGAATTTTGGAAGCAATCGAGCAGCAAATCAGGCATCGGCTGGCAGCGTAACGATTCATAGGAAAT
species | Glycine max |
transcript | GLYMA20G03040.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTTCTGCCAAAACGAGCAATCCAG TTTGGTTCAAGAATTGCAAGGGAATCAAATCGGAAGAATTTTGGAAGCAATEST: gi|16346083|gb|BI971678.1|BI971678
genomic: AGTTCTGCCAAAACGAGCAATCCAGgtgtgcatct ... attgttgtagTTTGGTTCAAGAATTGCAAGGGAATCAAATCGGAAGAATTTTGGAAGCAAT
EST: AATTGCTTGGTTTATATGAAGCAGCAGTTCTGCCAAAACGAGCAATCCAG TTTGGTTCAAGAATTGCAAGGGAATCAAATCGGAAGAATTTTGGAAGCAATEST: gi|120529547|gb|EH257681.1|EH257681
genomic: AATTGCTTGGTTTATATGAAGCAGCAGTTCTGCCAAAACGAGCAATCCAGgtgtgcatct ... attgttgtagTTTGGTTCAAGAATTGCAAGGGAATCAAATCGGAAGAATTTTGGAAGCAAT
EST: AATTGCTTGGTTTATATGAAGCAGCAGTTCTGCCAAAACGAGCAATCCAG TTTGGTTCAAGAATTEST: gi|120529540|gb|EH257674.1|EH257674
genomic: AATTGCTTGGTTTATATGAAGCAGCAGTTCTGCCAAAACGAGCAATCCAGgtgtgcatct ... attgttgtagTTTGGTTCAAGAATT
EST: AATTGCTTGGTTTATATGAAGCAGCAGTTCTGCCAAAACGAGCAATCCAG TTTGGTTCAAGAATTGCAAGGGAATCAAATCGGAAGAATTTTGGAAGCAAT
genomic: AATTGCTTGGTTTATATGAAGCAGCAGTTCTGCCAAAACGAGCAATCCAGgtgtgcatct ... attgttgtagTTTGGTTCAAGAATTGCAAGGGAATCAAATCGGAAGAATTTTGGAAGCAAT
ccactcttttgcctggtgattaatgtgtcattctgttatatgtttattgttgtagTTTGGTTCAAGAATTGCAAGGGAATCAAATCGGAAGAATTTTGGAAGCAATCGAGCAGCAAATCAGGCATCGGCTGGCAGCGTAACGATTCATAGGAAAT
gattaat putative branch site (score: 3)
ttatatgtttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatttgtttataagttgcacatatgtatgtagcttggttaattaccactcttttgcctggtgattaatgtgtcattctgttatatgtttattgttgtagTTTGGTTCAAGAATTGCAAGGGAATCAAATCGGAAGAATTTTGGAAGCAATCGAGCAGCAAATCAGGCATCGGCTGGCAGCGTAACGATTCATAGGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - tgcacat
- - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcattc