Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaccaagtggtaagtttctttgtgtttgaatcttttgcggtatggtttgtgtgggcgtggtgtcagaggtggtgctttcgttgtgttttgtagGATAGTTCGAGGACTCTTTGGTTTGGCCGAGATGCGTTTGGTAGGCGGAGCCTCCTTGTTCACTGGCCGACAGTAGATGACTCAACCTTTCTGCTTTCTT

Basic information

species Glycine max
transcript GLYMA20G03040.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03040.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g00390.t01 (Vitis vinifera), 3'ss of exon 3
gtaacaccaagtggtaagtttctttgtgtttgaatcttt-----tgcggtatgg---tttgtgtgggcgtggtgtcagaggtggtgctttcgttgtgttttgtagGATAGTTCGAGGACTCTTTGGTTTGGCCGAGATGCGTTTGGTAGGCGGAGCCTCCTTGTTCACTGGCCGACAGTAGATGACTCAACCTTTCTGCTTTCTT
|||||  ||||||||||||||||   |||    || |       | | | ||||   ||| | ||       |  | |||||  | || |  || |   || ||||||||||| || ||  | ||||||||  ||||||| || || ||||||||||||||||| ||||||||||   | || || |     ||| |||| || |
gtaacttcaagtggtaagtttctagttgtaatgatttcaaatgatacagcatggacatttttttgcttccttttcctgaggttttactgtatttatcacttatagGATAGTTCAAGAACCATGTGGTTTGGTAGAGATGCATTCGGAAGGCGGAGCCTCCTTGTGCACTGGCCGAATTTGGAGGATTGCCGGTTTTTGCTATCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtatggtttgtgtgggcgtggtgtcagaggtggtgctttcgttgtgttttgtagGATAGTTCGAGGACTCTTTGGTTTGGCCGAGATGCGTTTGGTAGGCGGAGCCTCCTTGTTCACTGGCCGACAGTAGATGACTCAACCTTTCTGCTTTCTT
                                               ttttgta  TA-rich tract